FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0004855 through 18771 annotations produced 1 hits

chr3R:10134815-10135566 (+) // 100.0 // (RNA polymerase II):

Annotation Number : CG3284
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1633743_at
Accessions : protein= , nucleotide= NP_731898;
Pathway : 0006350 // transcription // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II prom
Interpro : "0005634 // nucleus // inferred from electronic annotation /// 0005665 // DNA-directed RNA polymerase II
FlyMine data for full length.
BioGrid reports that CG3284 interacts with CG9375 CG18085 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	180 ± 6	4 of 4	0.60	Down
Head	239 ± 10	4 of 4	0.80	Down
Eye	305 ± 9	4 of 4	1.07	None
Thoracicoabdominal ganglion	176 ± 4	4 of 4	0.60	Down
Salivary gland	412 ± 7	4 of 4	1.45	Up
Crop	292 ± 8	4 of 4	1.00	None
Midgut	254 ± 4	4 of 4	0.90	Down
Tubule	101 ± 1	4 of 4	0.40	Down
Hindgut	284 ± 10	4 of 4	1.00	None
Heart	195 ± 2	4 of 4	0.69	Down
Fat body	229 ± 31	4 of 4	0.81	Down
Ovary	490 ± 6	4 of 4	1.70	Up
Testis	106 ± 3	4 of 4	0.40	Down
Male accessory glands	487 ± 18	4 of 4	1.70	Up
Virgin spermatheca	172 ± 8	4 of 4	0.60	Down
Mated spermatheca	173 ± 14	4 of 4	0.61	Down
Adult carcass	201 ± 7	4 of 4	0.70	Down
Larval CNS	421 ± 27	4 of 4	1.48	Up
Larval Salivary gland	587 ± 30	4 of 4	2.06	Up
Larval midgut	188 ± 2	4 of 4	0.66	Down
Larval tubule	265 ± 22	4 of 4	0.90	None
Larval hindgut	271 ± 6	4 of 4	0.95	None
Larval fat body	233 ± 17	4 of 4	0.80	None
Larval trachea	513 ± 20	4 of 4	1.80	Up
Larval carcass	295 ± 10	4 of 4	1.04	None
S2 cells (growing)	415 ± 8	4 of 4	1.46	Up
Whole fly	285 ± 9	4 of 4

Looking for FBgn0004855. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720