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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004855 through 18771 annotations produced 1 hits



chr3R:10134815-10135566 (+) // 100.0 // (RNA polymerase II):

Annotation Number : CG3284
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1633743_at
Accessions : protein= , nucleotide= NP_731898;
Pathway : 0006350 // transcription // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II prom
Interpro : "0005634 // nucleus // inferred from electronic annotation /// 0005665 // DNA-directed RNA polymerase II
FlyMine data for full length.
BioGrid reports that CG3284 interacts with CG9375 CG18085 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain180 64 of 4 0.60Down
Head239 104 of 4 0.80Down
Eye305 94 of 4 1.07None
Thoracicoabdominal ganglion176 44 of 4 0.60Down
Salivary gland412 74 of 4 1.45Up
Crop292 84 of 4 1.00None
Midgut254 44 of 4 0.90Down
Tubule101 14 of 4 0.40Down
Hindgut284 104 of 4 1.00None
Heart195 24 of 4 0.69Down
Fat body229 314 of 4 0.81Down
Ovary490 64 of 4 1.70Up
Testis106 34 of 4 0.40Down
Male accessory glands487 184 of 4 1.70Up
Virgin spermatheca172 84 of 4 0.60Down
Mated spermatheca173 144 of 4 0.61Down
Adult carcass201 74 of 4 0.70Down
Larval CNS421 274 of 4 1.48Up
Larval Salivary gland587 304 of 4 2.06Up
Larval midgut188 24 of 4 0.66Down
Larval tubule265 224 of 4 0.90None
Larval hindgut271 64 of 4 0.95None
Larval fat body233 174 of 4 0.80None
Larval trachea513 204 of 4 1.80Up
Larval carcass295 104 of 4 1.04None
S2 cells (growing)415 84 of 4 1.46Up
Whole fly285 94 of 4

Looking for FBgn0004855. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime