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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004858 through 18771 annotations produced 3 hits



elbow B (elB):

Annotation Number : CG4220
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004858
Gbrowse : chr2L:14387121-14407758 (-) // 100.0 //
Probeset : 1640000_at
Accessions : protein= NP_523566; /// NP_788059; /// NP_995712;, nucleotide= NM_078842; /// NM_176045; /// NM_205990;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription fa
FlyMine data for FBgn0004858.
BioGrid reports that CG4220 interacts with CG7056 CG4645 CG4818 CG5009 CG5637 CG7200 CG7548 CG3978 CG3938 CG4491 CG4491 .
VDRC has 3 RNAi stocks for FBgn0004858 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 12 of 4 1.70None
Head10 20 of 4 2.30None
Eye8 10 of 4 1.83None
Thoracicoabdominal ganglion5 10 of 4 1.10None
Salivary gland25 51 of 4 5.61Up
Crop9 30 of 4 2.10None
Midgut2 00 of 4 0.50Down
Tubule2 00 of 4 0.60Down
Hindgut12 20 of 4 2.70None
Heart4 10 of 4 0.91None
Fat body3 30 of 4 0.77None
Ovary0 00 of 4 0.20Down
Testis7 21 of 4 1.60None
Male accessory glands9 31 of 4 2.10None
Virgin spermatheca9 21 of 4 2.04None
Mated spermatheca10 21 of 4 2.38None
Adult carcass8 30 of 4 2.00None
Larval CNS5 40 of 4 1.28None
Larval Salivary gland14 30 of 4 3.16Up
Larval midgut7 20 of 4 1.78None
Larval tubule1 00 of 4 0.40Down
Larval hindgut9 10 of 4 2.22Up
Larval fat body3 10 of 4 0.70None
Larval trachea7 01 of 4 1.59Up
Larval carcass7 20 of 4 1.78None
S2 cells (growing)1 00 of 4 0.29Down
Whole fly4 00 of 4



elbow B (elB):

Annotation Number : CG4220
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004858
Gbrowse : chr2L:14391177-14407758 (-) // 100.0 //
Probeset : 1631207_at
Accessions : protein= NP_523566; /// NP_788059; /// NP_995712;, nucleotide= NM_078842; /// NM_176045; /// NM_205990;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription fa
FlyMine data for FBgn0004858.
BioGrid reports that CG4220 interacts with CG7056 CG4645 CG4818 CG5009 CG5637 CG7200 CG7548 CG3978 CG3938 CG4491 CG4491 .
VDRC has 3 RNAi stocks for FBgn0004858 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain63 24 of 4 2.80Up
Head52 54 of 4 2.30Up
Eye29 24 of 4 1.27None
Thoracicoabdominal ganglion80 64 of 4 3.50Up
Salivary gland115 94 of 4 5.07Up
Crop101 54 of 4 4.40Up
Midgut37 24 of 4 1.60Up
Tubule7 00 of 4 0.30Down
Hindgut137 84 of 4 6.00Up
Heart25 14 of 4 1.12None
Fat body9 20 of 4 0.42Down
Ovary3 10 of 4 0.20Down
Testis14 14 of 4 0.60Down
Male accessory glands277 254 of 412.20Up
Virgin spermatheca62 54 of 4 2.76Up
Mated spermatheca92 144 of 4 4.05Up
Adult carcass65 94 of 4 2.90Up
Larval CNS51 84 of 4 2.27Up
Larval Salivary gland176 134 of 4 7.73Up
Larval midgut44 24 of 4 1.93Up
Larval tubule9 00 of 4 0.40Down
Larval hindgut93 64 of 4 4.08Up
Larval fat body3 00 of 4 0.20Down
Larval trachea103 224 of 4 4.51Up
Larval carcass54 14 of 4 2.39Up
S2 cells (growing)8 00 of 4 0.35Down
Whole fly22 04 of 4



elbow B (elB):

Annotation Number : CG4220
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004858
Gbrowse : chr2L:14391177-14407758 (-) // 100.0 //
Probeset : 1623877_a_at
Accessions : protein= NP_523566; /// NP_788059; /// NP_995712;, nucleotide= NM_078842; /// NM_176045; /// NM_205990;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription fa
FlyMine data for FBgn0004858.
BioGrid reports that CG4220 interacts with CG7056 CG4645 CG4818 CG5009 CG5637 CG7200 CG7548 CG3978 CG3938 CG4491 CG4491 .
VDRC has 3 RNAi stocks for FBgn0004858 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain32 34 of 4 2.50Up
Head21 21 of 4 1.60Up
Eye12 01 of 4 0.96None
Thoracicoabdominal ganglion41 44 of 4 3.10Up
Salivary gland55 52 of 4 4.18Up
Crop51 34 of 4 3.80Up
Midgut26 10 of 4 2.00Up
Tubule13 00 of 4 1.00None
Hindgut85 24 of 4 6.40Up
Heart13 22 of 4 0.99None
Fat body19 50 of 4 1.42None
Ovary6 00 of 4 0.50Down
Testis12 30 of 4 0.90None
Male accessory glands101 94 of 4 7.60Up
Virgin spermatheca19 40 of 4 1.46None
Mated spermatheca22 51 of 4 1.67None
Adult carcass36 53 of 4 2.70Up
Larval CNS22 44 of 4 1.68Up
Larval Salivary gland68 54 of 4 5.16Up
Larval midgut30 20 of 4 2.29Up
Larval tubule8 20 of 4 0.70None
Larval hindgut33 54 of 4 2.52Up
Larval fat body9 20 of 4 0.70None
Larval trachea38 84 of 4 2.86Up
Larval carcass25 32 of 4 1.94Up
S2 cells (growing)11 10 of 4 0.85None
Whole fly13 10 of 4

Looking for FBgn0004858. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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