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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004860 through 18771 annotations produced 1 hits



Polyhomeotic (ph-d):

Annotation Number : CG3895
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004860
Gbrowse : chrX:2010898-2015757 (-) // 100.0 //
Probeset : 1626736_at
Accessions : protein= NP_001096865; /// NP_524794;, nucleotide= NM_001103395; /// NM_080055;
Pathway : 0000785 // chromatin // non-traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005634
Interpro : 0003682 // chromatin binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical inte
FlyMine data for FBgn0004860.
BioGrid reports that CG3895 interacts with CG4195 CG17835 CG32443 CG32443 CG2759 CG6464 CG4637 CG2530 .
TRiP has 2 RNAi stocks for FBgn0004860 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 24 of 4 1.50Up
Head23 12 of 4 1.00None
Eye10 21 of 4 0.42Down
Thoracicoabdominal ganglion29 01 of 4 1.20None
Salivary gland11 30 of 4 0.44Down
Crop26 20 of 4 1.10None
Midgut20 11 of 4 0.80None
Tubule6 10 of 4 0.30Down
Hindgut21 30 of 4 0.90None
Heart7 10 of 4 0.30Down
Fat body32 50 of 4 1.32None
Ovary34 04 of 4 1.40Up
Testis12 00 of 4 0.50Down
Male accessory glands28 30 of 4 1.10None
Virgin spermatheca24 40 of 4 0.98None
Mated spermatheca16 10 of 4 0.66Down
Adult carcass25 40 of 4 1.00None
Larval CNS61 44 of 4 2.49Up
Larval Salivary gland27 21 of 4 1.12None
Larval midgut18 60 of 4 0.74None
Larval tubule12 30 of 4 0.50Down
Larval hindgut20 20 of 4 0.82None
Larval fat body18 20 of 4 0.70None
Larval trachea14 10 of 4 0.60Down
Larval carcass17 50 of 4 0.72None
S2 cells (growing)139 44 of 4 5.66Up
Whole fly24 11 of 4

Looking for FBgn0004860. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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