FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0004865 through 18771 annotations produced 1 hits

nuclear hormone receptor (Eip78C):

Annotation Number : CG18023
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004865
Gbrowse : chr3L:21220018-21257721 (+) // 100.0 //
Probeset : 1640770_a_at
Accessions : protein= NP_524195; /// NP_730609; /// NP_996135;, nucleotide= NM_079471; /// NM_168892; /// NM_206413;
Pathway : DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electr
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0004865.
Homophila reports that CG18023 is a close match (8e-13) to human gene VDR (NP_001017535), a gene associated with Osteoporosis, involutional, 166710 (1) (?);Rickets, vitamin D-resistant, type IIA, 277440 (3).
TRiP has 1 RNAi stocks for FBgn0004865 available for purchase.
VDRC has 1 RNAi stocks for FBgn0004865 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	59 ± 1	4 of 4	7.70	Up
Head	19 ± 4	2 of 4	2.50	None
Eye	4 ± 1	0 of 4	0.51	None
Thoracicoabdominal ganglion	78 ± 14	4 of 4	10.10	Up
Salivary gland	4 ± 1	0 of 4	0.54	None
Crop	6 ± 2	0 of 4	0.80	None
Midgut	12 ± 1	0 of 4	1.60	None
Tubule	4 ± 0	0 of 4	0.50	Down
Hindgut	16 ± 1	0 of 4	2.10	Up
Heart	6 ± 2	0 of 4	0.85	None
Fat body	3 ± 3	0 of 4	0.46	None
Ovary	2 ± 1	0 of 4	0.30	None
Testis	5 ± 1	0 of 4	0.70	None
Male accessory glands	10 ± 4	0 of 4	1.40	None
Virgin spermatheca	3 ± 1	0 of 4	0.39	None
Mated spermatheca	2 ± 0	0 of 4	0.30	None
Adult carcass	5 ± 2	0 of 4	0.60	None
Larval CNS	7 ± 4	0 of 4	0.95	None
Larval Salivary gland	7 ± 3	0 of 4	0.96	None
Larval midgut	17 ± 1	3 of 4	2.30	Up
Larval tubule	57 ± 9	3 of 4	7.40	Up
Larval hindgut	30 ± 5	3 of 4	3.97	Up
Larval fat body	164 ± 13	4 of 4	21.20	Up
Larval trachea	1 ± 1	0 of 4	0.25	None
Larval carcass	63 ± 24	3 of 4	8.22	None
S2 cells (growing)	9 ± 1	0 of 4	1.22	None
Whole fly	7 ± 2	0 of 4

Looking for FBgn0004865. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720