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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004868 through 18771 annotations produced 2 hits



Gdi-related (Gdi):

Annotation Number : CG4422
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004868
Gbrowse : chr2L:9491917-9494927 (-) // 100.0 //
Probeset : 1641129_at
Accessions : protein= NP_523524;, nucleotide= NM_078800;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay /// 0008021 // synaptic vesicle // non-traceable
Interpro : 0005092 // GDP-dissociation inhibitor activity // inferred from direct assay /// 0005092 // GDP-dissociation inhibitor a
FlyMine data for FBgn0004868.
Homophila reports that CG4422 is a close match (4e-29) to human gene CHM;TCD (NP_000381), a gene associated with Choroideremia, 303100 (3).
BioGrid reports that CG4422 interacts with CG6412 .
TRiP has 2 RNAi stocks for FBgn0004868 available for purchase.
VDRC has 2 RNAi stocks for FBgn0004868 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain871 374 of 4 1.00None
Head627 434 of 4 0.70Down
Eye1127 574 of 4 1.29Up
Thoracicoabdominal ganglion674 254 of 4 0.80Down
Salivary gland1102 774 of 4 1.26None
Crop915 444 of 4 1.00None
Midgut1138 294 of 4 1.30Up
Tubule577 434 of 4 0.70Down
Hindgut1079 174 of 4 1.20Up
Heart1859 694 of 4 2.13Up
Fat body1034 914 of 4 1.18Up
Ovary1061 194 of 4 1.20Up
Testis384 64 of 4 0.40Down
Male accessory glands1419 454 of 4 1.60Up
Virgin spermatheca1296 344 of 4 1.48Up
Mated spermatheca1425 364 of 4 1.63Up
Adult carcass791 244 of 4 0.90Down
Larval CNS887 894 of 4 1.01None
Larval Salivary gland2357 2104 of 4 2.70Up
Larval midgut1425 834 of 4 1.63Up
Larval tubule2557 264 of 4 2.90Up
Larval hindgut1283 414 of 4 1.47Up
Larval fat body1823 1814 of 4 2.10Up
Larval trachea1810 1094 of 4 2.07Up
Larval carcass1011 884 of 4 1.16None
S2 cells (growing)859 104 of 4 0.98None
Whole fly874 204 of 4



chr2L:9762360-9763244 (-) // 100.0 // (Gdi-related /// TBP-associated factor 30kD subunit beta):

Annotation Number : CG4079
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1636486_at
Accessions : protein= , nucleotide= NP_523524; /// NP_723484;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // non-traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter
FlyMine data for full length.
BioGrid reports that CG4079 interacts with CG4185 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain118 34 of 4 0.80Down
Head70 34 of 4 0.50Down
Eye102 94 of 4 0.73Down
Thoracicoabdominal ganglion107 24 of 4 0.80Down
Salivary gland127 64 of 4 0.91None
Crop94 24 of 4 0.70Down
Midgut79 54 of 4 0.60Down
Tubule60 14 of 4 0.40Down
Hindgut81 54 of 4 0.60Down
Heart82 54 of 4 0.59Down
Fat body68 94 of 4 0.49Down
Ovary209 24 of 4 1.50Up
Testis66 64 of 4 0.50Down
Male accessory glands157 74 of 4 1.10None
Virgin spermatheca74 24 of 4 0.53Down
Mated spermatheca87 24 of 4 0.62Down
Adult carcass64 74 of 4 0.50Down
Larval CNS188 84 of 4 1.34Up
Larval Salivary gland186 54 of 4 1.32Up
Larval midgut68 84 of 4 0.48Down
Larval tubule109 44 of 4 0.80Down
Larval hindgut83 24 of 4 0.59Down
Larval fat body85 84 of 4 0.60Down
Larval trachea148 134 of 4 1.05None
Larval carcass99 14 of 4 0.71Down
S2 cells (growing)142 54 of 4 1.01None
Whole fly141 24 of 4

Looking for FBgn0004868. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime