FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0004868 through 18771 annotations produced 2 hits

chr2L:9762360-9763244 (-) // 100.0 // (Gdi-related /// TBP-associated factor 30kD subunit beta):

Annotation Number : CG4079
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1636486_at
Accessions : protein= , nucleotide= NP_523524; /// NP_723484;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // non-traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter
FlyMine data for full length.
BioGrid reports that CG4079 interacts with CG4185 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	118 ± 3	4 of 4	0.80	Down
Head	70 ± 3	4 of 4	0.50	Down
Eye	102 ± 9	4 of 4	0.73	Down
Thoracicoabdominal ganglion	107 ± 2	4 of 4	0.80	Down
Salivary gland	127 ± 6	4 of 4	0.91	None
Crop	94 ± 2	4 of 4	0.70	Down
Midgut	79 ± 5	4 of 4	0.60	Down
Tubule	60 ± 1	4 of 4	0.40	Down
Hindgut	81 ± 5	4 of 4	0.60	Down
Heart	82 ± 5	4 of 4	0.59	Down
Fat body	68 ± 9	4 of 4	0.49	Down
Ovary	209 ± 2	4 of 4	1.50	Up
Testis	66 ± 6	4 of 4	0.50	Down
Male accessory glands	157 ± 7	4 of 4	1.10	None
Virgin spermatheca	74 ± 2	4 of 4	0.53	Down
Mated spermatheca	87 ± 2	4 of 4	0.62	Down
Adult carcass	64 ± 7	4 of 4	0.50	Down
Larval CNS	188 ± 8	4 of 4	1.34	Up
Larval Salivary gland	186 ± 5	4 of 4	1.32	Up
Larval midgut	68 ± 8	4 of 4	0.48	Down
Larval tubule	109 ± 4	4 of 4	0.80	Down
Larval hindgut	83 ± 2	4 of 4	0.59	Down
Larval fat body	85 ± 8	4 of 4	0.60	Down
Larval trachea	148 ± 13	4 of 4	1.05	None
Larval carcass	99 ± 1	4 of 4	0.71	Down
S2 cells (growing)	142 ± 5	4 of 4	1.01	None
Whole fly	141 ± 2	4 of 4

Gdi-related (Gdi):

Annotation Number : CG4422
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004868
Gbrowse : chr2L:9491917-9494927 (-) // 100.0 //
Probeset : 1641129_at
Accessions : protein= NP_523524;, nucleotide= NM_078800;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay /// 0008021 // synaptic vesicle // non-traceable
Interpro : 0005092 // GDP-dissociation inhibitor activity // inferred from direct assay /// 0005092 // GDP-dissociation inhibitor a
FlyMine data for FBgn0004868.
Homophila reports that CG4422 is a close match (4e-29) to human gene CHM;TCD (NP_000381), a gene associated with Choroideremia, 303100 (3).
BioGrid reports that CG4422 interacts with CG6412 .
TRiP has 2 RNAi stocks for FBgn0004868 available for purchase.
VDRC has 2 RNAi stocks for FBgn0004868 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	871 ± 37	4 of 4	1.00	None
Head	627 ± 43	4 of 4	0.70	Down
Eye	1127 ± 57	4 of 4	1.29	Up
Thoracicoabdominal ganglion	674 ± 25	4 of 4	0.80	Down
Salivary gland	1102 ± 77	4 of 4	1.26	None
Crop	915 ± 44	4 of 4	1.00	None
Midgut	1138 ± 29	4 of 4	1.30	Up
Tubule	577 ± 43	4 of 4	0.70	Down
Hindgut	1079 ± 17	4 of 4	1.20	Up
Heart	1859 ± 69	4 of 4	2.13	Up
Fat body	1034 ± 91	4 of 4	1.18	Up
Ovary	1061 ± 19	4 of 4	1.20	Up
Testis	384 ± 6	4 of 4	0.40	Down
Male accessory glands	1419 ± 45	4 of 4	1.60	Up
Virgin spermatheca	1296 ± 34	4 of 4	1.48	Up
Mated spermatheca	1425 ± 36	4 of 4	1.63	Up
Adult carcass	791 ± 24	4 of 4	0.90	Down
Larval CNS	887 ± 89	4 of 4	1.01	None
Larval Salivary gland	2357 ± 210	4 of 4	2.70	Up
Larval midgut	1425 ± 83	4 of 4	1.63	Up
Larval tubule	2557 ± 26	4 of 4	2.90	Up
Larval hindgut	1283 ± 41	4 of 4	1.47	Up
Larval fat body	1823 ± 181	4 of 4	2.10	Up
Larval trachea	1810 ± 109	4 of 4	2.07	Up
Larval carcass	1011 ± 88	4 of 4	1.16	None
S2 cells (growing)	859 ± 10	4 of 4	0.98	None
Whole fly	874 ± 20	4 of 4

Looking for FBgn0004868. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720