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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004870 through 18771 annotations produced 1 hits



bric-a-brac (bab1):

Annotation Number : CG9097
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004870
Gbrowse : chr3L:1036368-1101089 (-) // 100.0 //
Probeset : 1623466_at
Accessions : protein= NP_728565; /// NP_995951;, nucleotide= NM_167852; /// NM_206229;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // non-traceable author stateme
FlyMine data for FBgn0004870.
BDGP gene expression has embryonic in situ data for bab1: 4 pix of staining in 1 body parts.
BioGrid reports that CG9097 interacts with CG9325 CG9326 .
TRiP has 1 RNAi stocks for FBgn0004870 available for purchase.
VDRC has 6 RNAi stocks for FBgn0004870 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain110 44 of 417.30Up
Head14 24 of 4 2.30Up
Eye11 04 of 4 1.82Up
Thoracicoabdominal ganglion89 24 of 414.00Up
Salivary gland5 20 of 4 0.85None
Crop40 14 of 4 6.30Up
Midgut8 12 of 4 1.30None
Tubule6 11 of 4 0.90None
Hindgut26 14 of 4 4.10Up
Heart12 13 of 4 1.99Up
Fat body5 41 of 4 0.92None
Ovary4 02 of 4 0.70None
Testis5 03 of 4 0.80None
Male accessory glands5 00 of 4 0.90None
Virgin spermatheca5 00 of 4 0.84None
Mated spermatheca10 42 of 4 1.58None
Adult carcass3 20 of 4 0.60None
Larval CNS43 84 of 4 6.87Up
Larval Salivary gland4 10 of 4 0.64None
Larval midgut2 10 of 4 0.45Down
Larval tubule2 10 of 4 0.40Down
Larval hindgut3 11 of 4 0.58None
Larval fat body9 32 of 4 1.50None
Larval trachea2 20 of 4 0.36Down
Larval carcass3 10 of 4 0.49None
S2 cells (growing)2 00 of 4 0.32Down
Whole fly6 02 of 4

Looking for FBgn0004870. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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