FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0004872 through 18771 annotations produced 2 hits

P-element induced wimpy testis (piwi):

Annotation Number : CG6122
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004872
Gbrowse : chr2L:10982204-10987416 (-) // 100.0 //
Probeset : 1641305_at
Accessions : protein= NP_476875;, nucleotide= NM_057527;
Pathway : DNA-mediated // inferred from mutant phenotype /// 0001709 // cell fate determination // traceable author statement ///
Interpro : engulfment // inferred from mutant phenotype /// 0007015 // actin filament organization // inferred from mutant phenoty
FlyMine data for FBgn0004872.
BDGP gene expression has embryonic in situ data for piwi: 11 pix of staining in 7 body parts.
BioGrid reports that CG6122 interacts with CG4637 .
TRiP has 4 RNAi stocks for FBgn0004872 available for purchase.
VDRC has 2 RNAi stocks for FBgn0004872 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	10 ± 1	2 of 4	0.10	Down
Head	6 ± 1	0 of 4	0.00	Down
Eye	5 ± 1	0 of 4	0.03	Down
Thoracicoabdominal ganglion	10 ± 2	1 of 4	0.10	Down
Salivary gland	8 ± 3	1 of 4	0.05	Down
Crop	11 ± 2	2 of 4	0.10	Down
Midgut	9 ± 1	0 of 4	0.00	Down
Tubule	8 ± 2	1 of 4	0.00	Down
Hindgut	10 ± 0	2 of 4	0.10	Down
Heart	6 ± 1	0 of 4	0.03	Down
Fat body	13 ± 5	2 of 4	0.07	Down
Ovary	583 ± 4	4 of 4	3.00	Up
Testis	18 ± 1	4 of 4	0.10	Down
Male accessory glands	7 ± 3	0 of 4	0.00	Down
Virgin spermatheca	6 ± 1	0 of 4	0.03	Down
Mated spermatheca	7 ± 1	0 of 4	0.04	Down
Adult carcass	15 ± 2	1 of 4	0.10	Down
Larval CNS	11 ± 1	4 of 4	0.06	Down
Larval Salivary gland	6 ± 1	0 of 4	0.04	Down
Larval midgut	9 ± 1	2 of 4	0.05	Down
Larval tubule	9 ± 1	1 of 4	0.00	Down
Larval hindgut	9 ± 2	2 of 4	0.05	Down
Larval fat body	49 ± 5	4 of 4	0.30	Down
Larval trachea	5 ± 1	0 of 4	0.03	Down
Larval carcass	8 ± 1	0 of 4	0.04	Down
S2 cells (growing)	17 ± 0	4 of 4	0.09	Down
Whole fly	194 ± 11	4 of 4

P-element induced wimpy testis /// SCAR (piwi /// SCAR):

Annotation Number : CG4636
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041781
Gbrowse : chr2L:10976773-10982396 (+) // 100.0 //
Probeset : 1638871_at
Accessions : protein= NP_609477;, nucleotide= NM_135633;
Pathway : DNA-mediated // inferred from mutant phenotype /// 0001709 // cell fate determination // traceable author statement ///
Interpro : engulfment // inferred from mutant phenotype /// 0007010 // cytoskeleton organization // non-traceable author statement
FlyMine data for FBgn0041781.
BDGP gene expression has embryonic in situ data for SCAR: 6 pix of staining in 1 body parts.
TRiP has 2 RNAi stocks for FBgn0041781 available for purchase.
VDRC has 1 RNAi stocks for FBgn0041781 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	641 ± 12	4 of 4	2.00	Up
Head	357 ± 16	4 of 4	1.10	None
Eye	342 ± 15	4 of 4	1.09	None
Thoracicoabdominal ganglion	563 ± 5	4 of 4	1.80	Up
Salivary gland	418 ± 12	4 of 4	1.33	Up
Crop	481 ± 21	4 of 4	1.50	Up
Midgut	294 ± 7	4 of 4	0.90	None
Tubule	283 ± 7	4 of 4	0.90	Down
Hindgut	332 ± 10	4 of 4	1.10	None
Heart	312 ± 14	4 of 4	0.99	None
Fat body	292 ± 22	4 of 4	0.93	None
Ovary	597 ± 8	4 of 4	1.90	Up
Testis	138 ± 6	4 of 4	0.40	Down
Male accessory glands	386 ± 5	4 of 4	1.20	Up
Virgin spermatheca	316 ± 28	4 of 4	1.00	None
Mated spermatheca	382 ± 28	4 of 4	1.22	None
Adult carcass	209 ± 6	4 of 4	0.70	Down
Larval CNS	606 ± 40	4 of 4	1.93	Up
Larval Salivary gland	449 ± 19	4 of 4	1.43	Up
Larval midgut	470 ± 13	4 of 4	1.49	Up
Larval tubule	616 ± 21	4 of 4	2.00	Up
Larval hindgut	550 ± 12	4 of 4	1.75	Up
Larval fat body	462 ± 25	4 of 4	1.50	Up
Larval trachea	353 ± 4	4 of 4	1.12	Up
Larval carcass	330 ± 13	4 of 4	1.05	None
S2 cells (growing)	868 ± 11	4 of 4	2.76	Up
Whole fly	314 ± 11	4 of 4

Looking for FBgn0004872. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720