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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0004876 through 18771 annotations produced 1 hits

center divider (cdi):

Annotation Number : CG6027
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004876
Gbrowse : chr3R:14870603-14920076 (-) // 100.0 //
Probeset : 1629473_at
Accessions : protein= NP_524401;, nucleotide= NM_079677;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // non-trace
FlyMine data for FBgn0004876.
BDGP gene expression has embryonic in situ data for cdi: 4 pix of staining in 1 body parts.
Homophila reports that CG6027 is a close match (7e-11) to human gene IGF1R (NP_000866), a gene associated with Intrauterine and postnatal growth retardation (3).
TRiP has 3 RNAi stocks for FBgn0004876 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004876 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain291 104 of 4 4.80Up
Head227 114 of 4 3.80Up
Eye755 924 of 412.51Up
Thoracicoabdominal ganglion263 14 of 4 4.40Up
Salivary gland140 134 of 4 2.33Up
Crop29 04 of 4 0.50Down
Midgut163 64 of 4 2.70Up
Tubule53 94 of 4 0.90None
Hindgut101 24 of 4 1.70Up
Heart25 44 of 4 0.42Down
Fat body10 24 of 4 0.17Down
Ovary6 03 of 4 0.10Down
Testis9 13 of 4 0.20Down
Male accessory glands64 64 of 4 1.10None
Virgin spermatheca19 24 of 4 0.32Down
Mated spermatheca19 54 of 4 0.32Down
Adult carcass56 44 of 4 0.90None
Larval CNS393 564 of 4 6.52Up
Larval Salivary gland14 14 of 4 0.23Down
Larval midgut177 94 of 4 2.94Up
Larval tubule63 34 of 4 1.10None
Larval hindgut142 34 of 4 2.35Up
Larval fat body9 21 of 4 0.10Down
Larval trachea23 154 of 4 0.39Down
Larval carcass20 34 of 4 0.35Down
S2 cells (growing)27 14 of 4 0.45Down
Whole fly60 54 of 4

Looking for FBgn0004876. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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