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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0004880 through 18771 annotations produced 1 hits


scratch (scrt):

Annotation Number : CG1130
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004880
Gbrowse : chr3L:3983915-3988589 (+) // 99.97 //
Probeset : 1630860_at
Accessions : protein= NP_523911;, nucleotide= NM_079187;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding tran
FlyMine data for FBgn0004880.
BDGP gene expression has embryonic in situ data for scrt: 21 pix of staining in 11 body parts.
Homophila reports that CG1130 is a close match (9e-11) to human gene HPE5;ZIC2 (NP_009060), a gene associated with Holoprosencephaly-5, 609637 (3).
BioGrid reports that CG1130 interacts with CG14487 CG4394 CG8704 .
TRiP has 1 RNAi stocks for FBgn0004880 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004880 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain949 ± 264 of 440.00Up
Head181 ± 114 of 4 7.60Up
Eye121 ± 164 of 4 5.10Up
Thoracicoabdominal ganglion871 ± 114 of 436.70Up
Salivary gland4 ± 10 of 4 0.20Down
Crop5 ± 11 of 4 0.20Down
Midgut2 ± 10 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut3 ± 00 of 4 0.10Down
Heart3 ± 10 of 4 0.17Down
Fat body19 ± 93 of 4 0.84None
Ovary0 ± 00 of 4 0.00Down
Testis2 ± 00 of 4 0.10Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca13 ± 14 of 4 0.57Down
Mated spermatheca14 ± 43 of 4 0.63None
Adult carcass15 ± 22 of 4 0.60Down
Larval CNS488 ± 564 of 420.57Up
Larval Salivary gland3 ± 10 of 4 0.16Down
Larval midgut2 ± 10 of 4 0.08Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut4 ± 11 of 4 0.18Down
Larval fat body2 ± 10 of 4 0.10Down
Larval trachea3 ± 40 of 4 0.16Down
Larval carcass1 ± 00 of 4 0.08Down
S2 cells (growing)0 ± 00 of 4 0.03Down
Whole fly23 ± 14 of 4

Looking for FBgn0004880. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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