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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004885 through 18771 annotations produced 1 hits



Tolkin (tok):

Annotation Number : CG6863
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004885
Gbrowse : chr3R:20545418-20574855 (+) // 100.0 //
Probeset : 1641053_s_at
Accessions : protein= NP_476879; /// NP_733035;, nucleotide= NM_057531; /// NM_170168;
Interpro : 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendope
FlyMine data for FBgn0004885.
BDGP gene expression has embryonic in situ data for tok: 27 pix of staining in 8 body parts.
Homophila reports that CG6863 is a close match (1e-14) to human gene MTSP1;ST14 (NP_068813), a gene associated with Ichthyosis with hypotrichosis, 610765 (3).
VDRC has 2 RNAi stocks for FBgn0004885 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain716 ± 134 of 4 6.80Up
Head397 ± 164 of 4 3.80Up
Eye237 ± 144 of 4 2.27Up
Thoracicoabdominal ganglion257 ± 74 of 4 2.50Up
Salivary gland5 ± 30 of 4 0.05Down
Crop11 ± 22 of 4 0.10Down
Midgut7 ± 10 of 4 0.10Down
Tubule12 ± 13 of 4 0.10Down
Hindgut20 ± 04 of 4 0.20Down
Heart369 ± 214 of 4 3.52Up
Fat body922 ± 934 of 4 8.80Up
Ovary14 ± 04 of 4 0.10Down
Testis83 ± 34 of 4 0.80Down
Male accessory glands4 ± 00 of 4 0.00Down
Virgin spermatheca791 ± 174 of 4 7.54Up
Mated spermatheca614 ± 414 of 4 5.86Up
Adult carcass284 ± 314 of 4 2.70Up
Larval CNS353 ± 214 of 4 3.37Up
Larval Salivary gland17 ± 24 of 4 0.17Down
Larval midgut10 ± 43 of 4 0.09Down
Larval tubule11 ± 14 of 4 0.10Down
Larval hindgut45 ± 64 of 4 0.44Down
Larval fat body615 ± 354 of 4 5.90Up
Larval trachea11 ± 52 of 4 0.11Down
Larval carcass307 ± 1594 of 4 2.93None
S2 cells (growing)2 ± 02 of 4 0.03Down
Whole fly104 ± 64 of 4

Looking for FBgn0004885. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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