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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004888 through 18771 annotations produced 1 hits



succinyl-CoA synthetase alpha-subunit (Scsalpha):

Annotation Number : CG1065
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004888
Gbrowse : chr3L:3814184-3818383 (+) // 100.0 //
Probeset : 1638529_at
Accessions : protein= NP_523905;, nucleotide= NM_079181;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0045244 // succinate-CoA ligase complex (GDP-forming
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from
FlyMine data for FBgn0004888.
Homophila reports that CG1065 is a close match (2e-98) to human gene SUCLA1;SUCLG1 (NP_003840), a gene associated with Lactic acidosis, fatal infantile, 245400 (3).
BioGrid reports that CG1065 interacts with CG14487 CG30122 CG3081 CG6569 CG9986 .
VDRC has 3 RNAi stocks for FBgn0004888 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1035 154 of 4 0.90None
Head1624 704 of 4 1.40Up
Eye1768 864 of 4 1.52Up
Thoracicoabdominal ganglion1290 184 of 4 1.10Up
Salivary gland2058 354 of 4 1.77Up
Crop1361 524 of 4 1.20Up
Midgut871 274 of 4 0.70Down
Tubule1355 694 of 4 1.20Up
Hindgut2073 254 of 4 1.80Up
Heart2377 1404 of 4 2.04Up
Fat body2819 1674 of 4 2.42Up
Ovary1007 214 of 4 0.90Down
Testis128 114 of 4 0.10Down
Male accessory glands1400 384 of 4 1.20Up
Virgin spermatheca2932 984 of 4 2.52Up
Mated spermatheca2808 774 of 4 2.42Up
Adult carcass2566 844 of 4 2.20Up
Larval CNS906 534 of 4 0.78Down
Larval Salivary gland2055 1294 of 4 1.77Up
Larval midgut960 624 of 4 0.83Down
Larval tubule966 544 of 4 0.80Down
Larval hindgut1824 464 of 4 1.57Up
Larval fat body3073 3424 of 4 2.60Up
Larval trachea1154 444 of 4 0.99None
Larval carcass1349 644 of 4 1.16None
S2 cells (growing)1025 154 of 4 0.88Down
Whole fly1162 384 of 4

Looking for FBgn0004888. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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