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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004889 through 18771 annotations produced 1 hits



chr3R:5952522-5965492 (-) // 100.0 // (phosphoprotein phosphatase 2A 55 kDa):

Annotation Number : CG6235
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1633501_s_at
Accessions : protein= , nucleotide= NP_476880; /// NP_476881; /// NP_599111; /// NP_599112; /// NP_599113; /// NP_731451; /// NP_731452; /// NP_731453;
Pathway : 0000090 // mitotic anaphase // inferred from mutant phenotype /// 0000278 // mitotic cell cycle // inferred from mutant
Interpro : 0000159 // protein phosphatase type 2A complex // inferred from electronic annotation /// 0000159 // protein phosphatase
FlyMine data for full length.
Homophila reports that CG6235 is a close match (0) to human gene PPP2R2B (NP_858064), a gene associated with Spinocerebellar ataxia 12, 604326 (3).
BioGrid reports that CG6235 interacts with CG8173 CG11579 CG3619 CG9375 CG18085 CG6459 CG2865 CG3793 CG5237 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain366 ± 24 of 4 1.80Up
Head352 ± 374 of 4 1.80Up
Eye418 ± 504 of 4 2.10Up
Thoracicoabdominal ganglion302 ± 194 of 4 1.50Up
Salivary gland327 ± 204 of 4 1.65Up
Crop649 ± 294 of 4 3.30Up
Midgut171 ± 74 of 4 0.90Down
Tubule347 ± 254 of 4 1.70Up
Hindgut1656 ± 224 of 4 8.30Up
Heart275 ± 244 of 4 1.38Up
Fat body231 ± 114 of 4 1.16Up
Ovary237 ± 94 of 4 1.20Up
Testis44 ± 24 of 4 0.20Down
Male accessory glands161 ± 44 of 4 0.80Down
Virgin spermatheca274 ± 174 of 4 1.38Up
Mated spermatheca243 ± 164 of 4 1.22None
Adult carcass186 ± 44 of 4 0.90None
Larval CNS560 ± 204 of 4 2.81Up
Larval Salivary gland255 ± 54 of 4 1.28Up
Larval midgut143 ± 74 of 4 0.72Down
Larval tubule701 ± 334 of 4 3.50Up
Larval hindgut1770 ± 1074 of 4 8.90Up
Larval fat body219 ± 244 of 4 1.10None
Larval trachea486 ± 504 of 4 2.44Up
Larval carcass223 ± 94 of 4 1.12None
S2 cells (growing)407 ± 84 of 4 2.05Up
Whole fly199 ± 64 of 4

Looking for FBgn0004889. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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