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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004893 through 18771 annotations produced 1 hits



bowel (bowl):

Annotation Number : CG10021
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004893
Gbrowse : chr2L:3771705-3784129 (+) // 100.0 //
Probeset : 1635803_s_at
Accessions : protein= NP_476883; /// NP_722939; /// NP_722940; /// NP_722941;, nucleotide= NM_057535; /// NM_164556; /// NM_164557; /// NM_164558;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription fa
FlyMine data for FBgn0004893.
BDGP gene expression has embryonic in situ data for bowl: 34 pix of staining in 34 body parts.
Homophila reports that CG10021 is a close match (9e-11) to human gene BCD1;COPEB;KLF6;ZF9 (NP_001291), a gene associated with Gastric cancer, somatic, 137215 (3);Prostate cancer, somatic, 176807 (3).
BioGrid reports that CG10021 interacts with CG12092 CG12203 CG14815 CG1034 CG11770 CG1389 CG1389 CG7873 .
TRiP has 1 RNAi stocks for FBgn0004893 available for purchase.
VDRC has 4 RNAi stocks for FBgn0004893 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 14 of 4 0.20Down
Head51 24 of 4 1.00None
Eye35 34 of 4 0.66Down
Thoracicoabdominal ganglion13 14 of 4 0.30Down
Salivary gland586 444 of 410.84Up
Crop337 144 of 4 6.20Up
Midgut111 84 of 4 2.10Up
Tubule354 584 of 4 6.50Up
Hindgut249 94 of 4 4.60Up
Heart6 02 of 4 0.12Down
Fat body23 24 of 4 0.43Down
Ovary20 14 of 4 0.40Down
Testis19 14 of 4 0.40Down
Male accessory glands234 104 of 4 4.30Up
Virgin spermatheca83 84 of 4 1.55Up
Mated spermatheca99 104 of 4 1.84Up
Adult carcass46 14 of 4 0.90None
Larval CNS124 34 of 4 2.31Up
Larval Salivary gland433 204 of 4 8.01Up
Larval midgut193 64 of 4 3.58Up
Larval tubule351 164 of 4 6.50Up
Larval hindgut169 54 of 4 3.14Up
Larval fat body33 14 of 4 0.60Down
Larval trachea374 224 of 4 6.93Up
Larval carcass150 84 of 4 2.78Up
S2 cells (growing)250 114 of 4 4.64Up
Whole fly54 44 of 4

Looking for FBgn0004893. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime