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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004896 through 18771 annotations produced 1 hits



forkhead domain 59A (fd59A):

Annotation Number : CG3668
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004896
Gbrowse : chr2R:18754043-18758229 (+) // 100.0 //
Probeset : 1625779_at
Accessions : protein= NP_523814;, nucleotide= NM_079090;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0004896.
Homophila reports that CG3668 is a close match (1e-11) to human gene CAGH44;FOXP2;SPCH1;TNRC10 (NP_683696), a gene associated with Speech-language disorder-1, 602081 (3).
BioGrid reports that CG3668 interacts with CG3731 CG3929 CG3971 CG4328 CG5814 CG6322 CG6337 CG6755 CG7001 CG7010 CG7399 CG7619 CG8642 CG8947 CG9745 .
TRiP has 1 RNAi stocks for FBgn0004896 available for purchase.
VDRC has 2 RNAi stocks for FBgn0004896 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain186 44 of 432.30Up
Head38 14 of 4 6.60Up
Eye10 23 of 4 1.84None
Thoracicoabdominal ganglion15 24 of 4 2.60Up
Salivary gland4 20 of 4 0.74None
Crop3 10 of 4 0.50None
Midgut1 00 of 4 0.30Down
Tubule4 00 of 4 0.80Down
Hindgut2 00 of 4 0.40Down
Heart2 00 of 4 0.45Down
Fat body2 10 of 4 0.34Down
Ovary0 00 of 4 0.10Down
Testis1 00 of 4 0.30Down
Male accessory glands2 00 of 4 0.40Down
Virgin spermatheca0 00 of 4 0.16Down
Mated spermatheca3 10 of 4 0.61None
Adult carcass4 10 of 4 0.70None
Larval CNS179 224 of 431.13Up
Larval Salivary gland1 00 of 4 0.31Down
Larval midgut3 10 of 4 0.60None
Larval tubule0 00 of 4 0.10Down
Larval hindgut0 00 of 4 0.06Down
Larval fat body6 00 of 4 1.10None
Larval trachea2 10 of 4 0.35Down
Larval carcass3 11 of 4 0.67None
S2 cells (growing)2 00 of 4 0.49Down
Whole fly5 02 of 4

Looking for FBgn0004896. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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