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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004897 through 18771 annotations produced 1 hits



forkhead domain 96Ca (fd96Ca):

Annotation Number : CG11921
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004897
Gbrowse : chr3R:20909273-20910392 (+) // 100.0 //
Probeset : 1631857_at
Accessions : protein= NP_524495;, nucleotide= NM_079771;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0004897.
Homophila reports that CG11921 is a close match (6e-11) to human gene CAGH44;FOXP2;SPCH1;TNRC10 (NP_683696), a gene associated with Speech-language disorder-1, 602081 (3).
VDRC has 2 RNAi stocks for FBgn0004897 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 1.00None
Head7 ± 20 of 4 2.00None
Eye3 ± 00 of 4 0.83None
Thoracicoabdominal ganglion3 ± 00 of 4 0.90None
Salivary gland7 ± 30 of 4 2.02None
Crop4 ± 10 of 4 1.20None
Midgut6 ± 10 of 4 1.70None
Tubule4 ± 10 of 4 1.10None
Hindgut9 ± 10 of 4 2.40Up
Heart4 ± 30 of 4 1.34None
Fat body10 ± 40 of 4 2.89None
Ovary4 ± 10 of 4 1.10None
Testis3 ± 10 of 4 1.00None
Male accessory glands4 ± 20 of 4 1.20None
Virgin spermatheca1 ± 00 of 4 0.51None
Mated spermatheca2 ± 10 of 4 0.69None
Adult carcass3 ± 00 of 4 0.80None
Larval CNS3 ± 20 of 4 0.87None
Larval Salivary gland3 ± 10 of 4 0.86None
Larval midgut5 ± 10 of 4 1.42None
Larval tubule6 ± 10 of 4 1.70None
Larval hindgut4 ± 10 of 4 1.28None
Larval fat body3 ± 00 of 4 0.90None
Larval trachea2 ± 10 of 4 0.67None
Larval carcass10 ± 30 of 4 2.74None
S2 cells (growing)3 ± 10 of 4 1.02None
Whole fly3 ± 10 of 4

Looking for FBgn0004897. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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