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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004901 through 18771 annotations produced 1 hits



transcript D (Prat):

Annotation Number : CG2867
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004901
Gbrowse : chr3R:3735309-3737501 (-) // 100.0 //
Probeset : 1627868_at
Accessions : protein= NP_524271;, nucleotide= NM_079547;
Interpro : "0004044 // amidophosphoribosyltransferase activity // inferred from mutant phenotype /// 0004044 // amidophosphoribosyl
FlyMine data for FBgn0004901.
BDGP gene expression has embryonic in situ data for Prat: 15 pix of staining in 16 body parts.
TRiP has 1 RNAi stocks for FBgn0004901 available for purchase.
VDRC has 1 RNAi stocks for FBgn0004901 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain27 ± 24 of 4 0.10Down
Head70 ± 84 of 4 0.30Down
Eye64 ± 34 of 4 0.25Down
Thoracicoabdominal ganglion39 ± 34 of 4 0.20Down
Salivary gland136 ± 14 of 4 0.53Down
Crop118 ± 74 of 4 0.50Down
Midgut112 ± 44 of 4 0.40Down
Tubule134 ± 134 of 4 0.50Down
Hindgut107 ± 14 of 4 0.40Down
Heart82 ± 84 of 4 0.32Down
Fat body64 ± 64 of 4 0.25Down
Ovary534 ± 104 of 4 2.10Up
Testis20 ± 14 of 4 0.10Down
Male accessory glands148 ± 24 of 4 0.60Down
Virgin spermatheca41 ± 14 of 4 0.16Down
Mated spermatheca55 ± 64 of 4 0.22Down
Adult carcass66 ± 24 of 4 0.30Down
Larval CNS160 ± 64 of 4 0.63Down
Larval Salivary gland165 ± 54 of 4 0.65Down
Larval midgut54 ± 34 of 4 0.21Down
Larval tubule41 ± 24 of 4 0.20Down
Larval hindgut144 ± 64 of 4 0.57Down
Larval fat body36 ± 24 of 4 0.10Down
Larval trachea156 ± 204 of 4 0.61Down
Larval carcass133 ± 144 of 4 0.53Down
S2 cells (growing)207 ± 34 of 4 0.82None
Whole fly254 ± 164 of 4

Looking for FBgn0004901. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime