FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0004903 through 18771 annotations produced 1 hits

Ribonuclear protein at 97D (Rb97D):

Annotation Number : CG6354
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004903
Gbrowse : chr3R:22699200-22701464 (-) // 100.0 //
Probeset : 1641564_a_at
Accessions : protein= NP_001014671; /// NP_001014672; /// NP_001014673; /// NP_001014674; /// NP_001014675; /// NP_001014676; /// NP_001014677; /// NP_524520; /// NP_733172;, nucleotide= NM_001014671; /// NM_001014672; /// NM_001014673; /// NM_001014674; /// NM_001014675; /// NM_001014676; /// NM_001014677; /// NM_079796; /// NM_170293;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0004903.
BDGP gene expression has embryonic in situ data for Rb97D: 4 pix of staining in 1 body parts.
Homophila reports that CG6354 is a close match (6e-15) to human gene ALS10;TARDBP;TDP43 (NP_031401), a gene associated with Amyotrophic lateral sclerosis 10, 612069 (3).
TRiP has 2 RNAi stocks for FBgn0004903 available for purchase.
VDRC has 1 RNAi stocks for FBgn0004903 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	183 ± 5	4 of 4	1.60	Up
Head	61 ± 7	4 of 4	0.50	Down
Eye	71 ± 6	4 of 4	0.61	Down
Thoracicoabdominal ganglion	104 ± 11	4 of 4	0.90	None
Salivary gland	68 ± 4	4 of 4	0.59	Down
Crop	65 ± 6	4 of 4	0.60	Down
Midgut	54 ± 5	4 of 4	0.50	Down
Tubule	32 ± 1	4 of 4	0.30	Down
Hindgut	59 ± 3	4 of 4	0.50	Down
Heart	47 ± 1	4 of 4	0.41	Down
Fat body	37 ± 6	4 of 4	0.32	Down
Ovary	152 ± 3	4 of 4	1.30	Up
Testis	347 ± 33	4 of 4	3.00	Up
Male accessory glands	78 ± 3	4 of 4	0.70	Down
Virgin spermatheca	27 ± 3	4 of 4	0.23	Down
Mated spermatheca	23 ± 1	4 of 4	0.20	Down
Adult carcass	43 ± 4	4 of 4	0.40	Down
Larval CNS	118 ± 8	4 of 4	1.02	None
Larval Salivary gland	57 ± 4	4 of 4	0.49	Down
Larval midgut	33 ± 0	4 of 4	0.29	Down
Larval tubule	39 ± 0	4 of 4	0.30	Down
Larval hindgut	40 ± 3	4 of 4	0.35	Down
Larval fat body	119 ± 37	4 of 4	1.00	None
Larval trachea	88 ± 7	4 of 4	0.76	Down
Larval carcass	35 ± 1	4 of 4	0.30	Down
S2 cells (growing)	148 ± 3	4 of 4	1.27	Up
Whole fly	116 ± 2	4 of 4

Looking for FBgn0004903. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720