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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004910 through 18771 annotations produced 1 hits



Ecdysone-induced protein 63F 1 (Eip63F-1):

Annotation Number : CG15855
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004910
Gbrowse : chr3L:3909965-3933637 (-) // 100.0 //
Probeset : 1626874_at
Accessions : protein= NP_524902;, nucleotide= NM_080163;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // p
Interpro : 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // non-traceable author
FlyMine data for FBgn0004910.
BioGrid reports that CG15855 interacts with CG1832 CG2381 CG9842 .
VDRC has 1 RNAi stocks for FBgn0004910 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain516 ± 234 of 4 4.90Up
Head223 ± 204 of 4 2.10Up
Eye138 ± 204 of 4 1.31None
Thoracicoabdominal ganglion571 ± 214 of 4 5.40Up
Salivary gland234 ± 184 of 4 2.22Up
Crop323 ± 234 of 4 3.10Up
Midgut174 ± 164 of 4 1.70Up
Tubule348 ± 314 of 4 3.30Up
Hindgut408 ± 134 of 4 3.90Up
Heart10 ± 04 of 4 0.10Down
Fat body7 ± 14 of 4 0.07Down
Ovary2 ± 02 of 4 0.00Down
Testis8 ± 04 of 4 0.10Down
Male accessory glands7 ± 12 of 4 0.10Down
Virgin spermatheca32 ± 24 of 4 0.30Down
Mated spermatheca63 ± 114 of 4 0.60Down
Adult carcass106 ± 84 of 4 1.00None
Larval CNS38 ± 54 of 4 0.36Down
Larval Salivary gland104 ± 204 of 4 0.99None
Larval midgut325 ± 414 of 4 3.08Up
Larval tubule287 ± 184 of 4 2.70Up
Larval hindgut226 ± 254 of 4 2.14Up
Larval fat body7 ± 11 of 4 0.10Down
Larval trachea22 ± 54 of 4 0.21Down
Larval carcass163 ± 114 of 4 1.54Up
S2 cells (growing)1 ± 01 of 4 0.01Down
Whole fly105 ± 104 of 4

Looking for FBgn0004910. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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