FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0004913 through 18771 annotations produced 2 hits

germline transcription factor /// ribosomal protein S3 (Gnf1 /// RpS3):

Annotation Number : CG6779
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002622
Gbrowse : chr3R:19184524-19185697 (+) // 100.0 //
Probeset : 1632269_at
Accessions : protein= NP_001014605; /// NP_476632; /// NP_524229;, nucleotide= NM_001014605; /// NM_057284; /// NM_079505;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct
FlyMine data for FBgn0002622.
BDGP gene expression has embryonic in situ data for RpS3: 4 pix of staining in 1 body parts.
BioGrid reports that CG6779 interacts with CG6864 CG7109 CG7264 CG7628 CG7787 CG7860 CG8368 CG8506 CG8674 CG8942 CG9163 CG9373 CG9424 CG9654 CG9665 CG3619 CG2759 CG2759 CG7803 .
TRiP has 2 RNAi stocks for FBgn0002622 available for purchase.
VDRC has 3 RNAi stocks for FBgn0002622 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2960 ± 47	4 of 4	0.70	Down
Head	4531 ± 168	4 of 4	1.10	None
Eye	6342 ± 71	4 of 4	1.57	Up
Thoracicoabdominal ganglion	4108 ± 100	4 of 4	1.00	None
Salivary gland	10420 ± 293	4 of 4	2.59	Up
Crop	6041 ± 363	4 of 4	1.50	Up
Midgut	5101 ± 123	4 of 4	1.30	Up
Tubule	5126 ± 36	4 of 4	1.30	Up
Hindgut	5112 ± 129	4 of 4	1.30	Up
Heart	6552 ± 479	4 of 4	1.63	Up
Fat body	5215 ± 581	4 of 4	1.29	Up
Ovary	3341 ± 66	4 of 4	0.80	None
Testis	1222 ± 26	4 of 4	0.30	Down
Male accessory glands	9099 ± 281	4 of 4	2.30	Up
Virgin spermatheca	5559 ± 178	4 of 4	1.38	Up
Mated spermatheca	5621 ± 192	4 of 4	1.40	Up
Adult carcass	5721 ± 320	4 of 4	1.40	Up
Larval CNS	2603 ± 156	4 of 4	0.65	Down
Larval Salivary gland	7284 ± 349	4 of 4	1.81	Up
Larval midgut	4373 ± 89	4 of 4	1.09	None
Larval tubule	4934 ± 81	4 of 4	1.20	Up
Larval hindgut	4203 ± 11	4 of 4	1.04	None
Larval fat body	7686 ± 846	4 of 4	1.90	Up
Larval trachea	5937 ± 222	4 of 4	1.47	Up
Larval carcass	4340 ± 277	4 of 4	1.08	None
S2 cells (growing)	4493 ± 70	4 of 4	1.11	None
Whole fly	4030 ± 241	4 of 4

germline transcription factor (Gnf1):

Annotation Number : CG1119
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004913
Gbrowse : chr3R:732347-735803 (+) // 100.0 //
Probeset : 1623086_at
Accessions : protein= NP_001014605; /// NP_524229;, nucleotide= NM_001014605; /// NM_079505;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct
FlyMine data for FBgn0004913.
BDGP gene expression has embryonic in situ data for RpS3: 14 pix of staining in 14 body parts.
TRiP has 1 RNAi stocks for FBgn0004913 available for purchase.
VDRC has 2 RNAi stocks for FBgn0004913 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	87 ± 3	4 of 4	0.40	Down
Head	65 ± 1	4 of 4	0.30	Down
Eye	68 ± 3	4 of 4	0.34	Down
Thoracicoabdominal ganglion	84 ± 2	4 of 4	0.40	Down
Salivary gland	95 ± 3	4 of 4	0.48	Down
Crop	77 ± 8	4 of 4	0.40	Down
Midgut	36 ± 4	4 of 4	0.20	Down
Tubule	73 ± 3	4 of 4	0.40	Down
Hindgut	60 ± 3	4 of 4	0.30	Down
Heart	62 ± 2	4 of 4	0.31	Down
Fat body	62 ± 9	4 of 4	0.32	Down
Ovary	387 ± 4	4 of 4	1.90	Up
Testis	175 ± 6	4 of 4	0.90	None
Male accessory glands	83 ± 4	4 of 4	0.40	Down
Virgin spermatheca	49 ± 3	4 of 4	0.25	Down
Mated spermatheca	51 ± 5	4 of 4	0.26	Down
Adult carcass	70 ± 1	4 of 4	0.40	Down
Larval CNS	206 ± 4	4 of 4	1.04	None
Larval Salivary gland	101 ± 2	4 of 4	0.51	Down
Larval midgut	50 ± 3	4 of 4	0.25	Down
Larval tubule	64 ± 1	4 of 4	0.30	Down
Larval hindgut	79 ± 4	4 of 4	0.40	Down
Larval fat body	70 ± 7	4 of 4	0.40	Down
Larval trachea	153 ± 6	4 of 4	0.77	None
Larval carcass	97 ± 1	4 of 4	0.49	Down
S2 cells (growing)	187 ± 11	4 of 4	0.95	None
Whole fly	198 ± 19	4 of 4

Looking for FBgn0004913. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720