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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004914 through 18771 annotations produced 1 hits



hepatocyte nuclear factor 4 (Hnf4):

Annotation Number : CG9310
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004914
Gbrowse : chr2L:8687280-8709038 (-) // 100.0 //
Probeset : 1640922_a_at
Accessions : protein= NP_001097126; /// NP_476887; /// NP_723413; /// NP_723414;, nucleotide= NM_001103656; /// NM_057539; /// NM_164833; /// NM_164834;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007492 // endoderm development // non-traceable author statem
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0004914.
BDGP gene expression has embryonic in situ data for Hnf4: 7 pix of staining in 2 body parts.
Homophila reports that CG9310 is a close match (2e-16) to human gene MCR;MLR;NR3C2 (NP_000892), a gene associated with Hypertension, early-onset, autosomal dominant, with exacerbation in pregnancy, 605115 (3);Pseudohypoaldosteronism type I, autosomal dominant, 177735 (3).
TRiP has 1 RNAi stocks for FBgn0004914 available for purchase.
VDRC has 1 RNAi stocks for FBgn0004914 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain85 44 of 4 0.30Down
Head337 74 of 4 1.20Up
Eye193 64 of 4 0.68Down
Thoracicoabdominal ganglion97 24 of 4 0.30Down
Salivary gland189 94 of 4 0.67Down
Crop870 124 of 4 3.10Up
Midgut276 24 of 4 1.00None
Tubule367 104 of 4 1.30Up
Hindgut528 134 of 4 1.90Up
Heart897 254 of 4 3.17Up
Fat body1101 934 of 4 3.89Up
Ovary308 84 of 4 1.10None
Testis46 14 of 4 0.20Down
Male accessory glands223 74 of 4 0.80Down
Virgin spermatheca488 144 of 4 1.73Up
Mated spermatheca535 154 of 4 1.89Up
Adult carcass831 454 of 4 2.90Up
Larval CNS60 84 of 4 0.21Down
Larval Salivary gland259 134 of 4 0.92None
Larval midgut277 74 of 4 0.98None
Larval tubule214 184 of 4 0.80Down
Larval hindgut231 34 of 4 0.82Down
Larval fat body238 184 of 4 0.80None
Larval trachea208 354 of 4 0.74Down
Larval carcass235 164 of 4 0.83None
S2 cells (growing)390 104 of 4 1.38Up
Whole fly282 74 of 4

Looking for FBgn0004914. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime