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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004921 through 18771 annotations produced 3 hits



G protein gamma 1 (Ggamma1):

Annotation Number : CG8261
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004921
Gbrowse : chr2R:4788907-4790635 (+) // 100.0 //
Probeset : 1639761_s_at
Accessions : protein= NP_523662; /// NP_724718; /// NP_724719; /// NP_724720; /// NP_724721;, nucleotide= NM_078938; /// NM_165631; /// NM_165632; /// NM_165633; /// NM_165634;
Pathway : 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation /// 0005834 // heterotrimeric G-prote
Interpro : 0003924 // GTPase activity // non-traceable author statement /// 0004871 // signal transducer activity // inferred from
FlyMine data for FBgn0004921.
TRiP has 2 RNAi stocks for FBgn0004921 available for purchase.
VDRC has 1 RNAi stocks for FBgn0004921 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2004 ± 764 of 4 1.50Up
Head2275 ± 394 of 4 1.70Up
Eye3436 ± 864 of 4 2.61Up
Thoracicoabdominal ganglion1874 ± 754 of 4 1.40Up
Salivary gland2060 ± 804 of 4 1.57Up
Crop2525 ± 454 of 4 1.90Up
Midgut1779 ± 384 of 4 1.40Up
Tubule2523 ± 454 of 4 1.90Up
Hindgut2313 ± 384 of 4 1.80Up
Heart2339 ± 474 of 4 1.78Up
Fat body2355 ± 1444 of 4 1.79Up
Ovary1097 ± 304 of 4 0.80Down
Testis896 ± 244 of 4 0.70Down
Male accessory glands1347 ± 424 of 4 1.00None
Virgin spermatheca2075 ± 754 of 4 1.58Up
Mated spermatheca2000 ± 594 of 4 1.52Up
Adult carcass1989 ± 614 of 4 1.50Up
Larval CNS2065 ± 704 of 4 1.57Up
Larval Salivary gland1390 ± 564 of 4 1.06None
Larval midgut3360 ± 784 of 4 2.55Up
Larval tubule2508 ± 484 of 4 1.90Up
Larval hindgut2654 ± 224 of 4 2.02Up
Larval fat body2261 ± 1924 of 4 1.70Up
Larval trachea2517 ± 1314 of 4 1.91Up
Larval carcass2176 ± 1074 of 4 1.65Up
S2 cells (growing)2471 ± 194 of 4 1.88Up
Whole fly1316 ± 364 of 4



G protein gamma 1 (Ggamma1):

Annotation Number : CG8261
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004921
Gbrowse : chr2R:4788907-4791117 (+) // 100.0 //
Probeset : 1629839_a_at
Accessions : protein= NP_523662; /// NP_724718; /// NP_724719; /// NP_724720; /// NP_724721;, nucleotide= NM_078938; /// NM_165631; /// NM_165632; /// NM_165633; /// NM_165634;
Pathway : 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation /// 0005834 // heterotrimeric G-prote
Interpro : 0003924 // GTPase activity // non-traceable author statement /// 0004871 // signal transducer activity // inferred from
FlyMine data for FBgn0004921.
TRiP has 2 RNAi stocks for FBgn0004921 available for purchase.
VDRC has 1 RNAi stocks for FBgn0004921 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1235 ± 674 of 411.50Up
Head549 ± 684 of 4 5.10Up
Eye117 ± 84 of 4 1.10None
Thoracicoabdominal ganglion828 ± 634 of 4 7.70Up
Salivary gland54 ± 14 of 4 0.50Down
Crop129 ± 134 of 4 1.20None
Midgut30 ± 24 of 4 0.30Down
Tubule41 ± 24 of 4 0.40Down
Hindgut81 ± 44 of 4 0.80None
Heart26 ± 14 of 4 0.25Down
Fat body80 ± 44 of 4 0.75None
Ovary7 ± 03 of 4 0.10Down
Testis9 ± 13 of 4 0.10Down
Male accessory glands16 ± 24 of 4 0.20Down
Virgin spermatheca26 ± 24 of 4 0.25Down
Mated spermatheca23 ± 04 of 4 0.22Down
Adult carcass95 ± 54 of 4 0.90None
Larval CNS330 ± 234 of 4 3.07Up
Larval Salivary gland18 ± 44 of 4 0.17Down
Larval midgut26 ± 04 of 4 0.24Down
Larval tubule51 ± 64 of 4 0.50Down
Larval hindgut24 ± 14 of 4 0.22Down
Larval fat body76 ± 74 of 4 0.70None
Larval trachea11 ± 24 of 4 0.10Down
Larval carcass24 ± 24 of 4 0.23Down
S2 cells (growing)49 ± 14 of 4 0.46Down
Whole fly107 ± 124 of 4



G protein gamma 1 (Ggamma1):

Annotation Number : CG8261
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004921
Gbrowse : chr2R:4788907-4792296 (+) // 100.0 //
Probeset : 1631340_at
Accessions : protein= NP_523662; /// NP_724718; /// NP_724719; /// NP_724720; /// NP_724721;, nucleotide= NM_078938; /// NM_165631; /// NM_165632; /// NM_165633; /// NM_165634;
Pathway : 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation /// 0005834 // heterotrimeric G-prote
Interpro : 0003924 // GTPase activity // non-traceable author statement /// 0004871 // signal transducer activity // inferred from
FlyMine data for FBgn0004921.
TRiP has 2 RNAi stocks for FBgn0004921 available for purchase.
VDRC has 1 RNAi stocks for FBgn0004921 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2802 ± 594 of 4 9.20Up
Head1729 ± 764 of 4 5.70Up
Eye1787 ± 1064 of 4 5.84Up
Thoracicoabdominal ganglion3281 ± 384 of 410.70Up
Salivary gland175 ± 34 of 4 0.57Down
Crop346 ± 94 of 4 1.10Up
Midgut58 ± 24 of 4 0.20Down
Tubule224 ± 134 of 4 0.70Down
Hindgut192 ± 44 of 4 0.60Down
Heart203 ± 44 of 4 0.67Down
Fat body129 ± 184 of 4 0.42Down
Ovary10 ± 13 of 4 0.00Down
Testis15 ± 24 of 4 0.10Down
Male accessory glands53 ± 64 of 4 0.20Down
Virgin spermatheca369 ± 214 of 4 1.21Up
Mated spermatheca352 ± 124 of 4 1.15Up
Adult carcass288 ± 204 of 4 0.90None
Larval CNS942 ± 714 of 4 3.08Up
Larval Salivary gland22 ± 10 of 4 0.07Down
Larval midgut48 ± 34 of 4 0.16Down
Larval tubule119 ± 104 of 4 0.40Down
Larval hindgut26 ± 14 of 4 0.09Down
Larval fat body152 ± 174 of 4 0.50Down
Larval trachea58 ± 424 of 4 0.19Down
Larval carcass47 ± 24 of 4 0.15Down
S2 cells (growing)67 ± 24 of 4 0.22Down
Whole fly305 ± 94 of 4

Looking for FBgn0004921. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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