FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0004926 through 18771 annotations produced 1 hits

Eukaryotic initiation factor 2beta (eIF-2beta):

Annotation Number : CG4153
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004926
Gbrowse : chr3L:12518190-12519837 (-) // 100.0 //
Probeset : 1636176_at
Accessions : protein= NP_524043;, nucleotide= NM_079319;
Pathway : 0005829 // cytosol // inferred from sequence or structural similarity /// 0005850 // eukaryotic translation initiation f
Interpro : 0000049 // tRNA binding // non-traceable author statement /// 0003743 // translation initiation factor activity // infer
FlyMine data for FBgn0004926.
BDGP gene expression has embryonic in situ data for eIF-2beta: 4 pix of staining in 1 body parts.
BioGrid reports that CG4153 interacts with CG4853 .
TRiP has 1 RNAi stocks for FBgn0004926 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004926 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	311 ± 7	4 of 4	0.40	Down
Head	558 ± 20	4 of 4	0.70	Down
Eye	543 ± 30	4 of 4	0.67	Down
Thoracicoabdominal ganglion	315 ± 8	4 of 4	0.40	Down
Salivary gland	1242 ± 61	4 of 4	1.53	Up
Crop	716 ± 17	4 of 4	0.90	None
Midgut	829 ± 31	4 of 4	1.00	None
Tubule	1119 ± 120	4 of 4	1.40	Up
Hindgut	623 ± 16	4 of 4	0.80	Down
Heart	624 ± 34	4 of 4	0.77	Down
Fat body	1070 ± 81	4 of 4	1.31	Up
Ovary	1258 ± 26	4 of 4	1.50	Up
Testis	519 ± 14	4 of 4	0.60	Down
Male accessory glands	1549 ± 39	4 of 4	1.90	Up
Virgin spermatheca	1286 ± 50	4 of 4	1.58	Up
Mated spermatheca	1640 ± 104	4 of 4	2.01	Up
Adult carcass	611 ± 68	4 of 4	0.70	None
Larval CNS	973 ± 35	4 of 4	1.19	Up
Larval Salivary gland	1890 ± 50	4 of 4	2.32	Up
Larval midgut	586 ± 26	4 of 4	0.72	Down
Larval tubule	712 ± 9	4 of 4	0.90	None
Larval hindgut	847 ± 59	4 of 4	1.04	None
Larval fat body	889 ± 93	4 of 4	1.10	None
Larval trachea	1296 ± 213	4 of 4	1.59	Up
Larval carcass	941 ± 110	4 of 4	1.16	None
S2 cells (growing)	1546 ± 15	4 of 4	1.90	Up
Whole fly	814 ± 38	4 of 4

Looking for FBgn0004926. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720