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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004956 through 18771 annotations produced 2 hits



/// unpaired (CG17377 /// os):

Annotation Number : CG17377
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031859
Gbrowse : chr2L:6801362-6802830 (-) // 100.0 //
Probeset : 1638626_a_at
Accessions : protein= NP_609074; /// NP_723219; /// NP_723220;, nucleotide= NM_135230; /// NM_164713; /// NM_164714;
Pathway : establishment of X:A ratio // non-traceable author statement /// 0016476 // regulation of embryonic cell shape // infer
Interpro : 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // trace
FlyMine data for FBgn0031859.
BDGP gene expression has embryonic in situ data for CG17377: 8 pix of staining in 1 body parts.
BioGrid reports that CG17377 interacts with CG1921 Dmel CG34168 CG9911 CG17377 CG17666 CG1830 CG3187 CG32156 CG3713 CG4821 CG4998 CG6707 CG7437 CG8942 CG9412 CG9908 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head3 21 of 4 0.00Down
Eye1 00 of 4 0.00Down
Thoracicoabdominal ganglion3 20 of 4 0.00Down
Salivary gland6 20 of 4 0.01Down
Crop4 10 of 4 0.00Down
Midgut4 10 of 4 0.00Down
Tubule8 31 of 4 0.00Down
Hindgut1 00 of 4 0.00Down
Heart4 10 of 4 0.01Down
Fat body6 30 of 4 0.01Down
Ovary2 00 of 4 0.00Down
Testis3086 994 of 4 4.80Up
Male accessory glands8 30 of 4 0.00Down
Virgin spermatheca5 10 of 4 0.01Down
Mated spermatheca7 32 of 4 0.01Down
Adult carcass25 73 of 4 0.00Down
Larval CNS3 00 of 4 0.01Down
Larval Salivary gland0 00 of 4 0.00Down
Larval midgut8 10 of 4 0.01Down
Larval tubule5 10 of 4 0.00Down
Larval hindgut5 10 of 4 0.01Down
Larval fat body453 2284 of 4 0.70None
Larval trachea24 361 of 4 0.04Down
Larval carcass7 10 of 4 0.01Down
S2 cells (growing)3 00 of 4 0.00Down
Whole fly647 44 of 4



chrX:18199376-18201858 (-) // 100.0 // (unpaired):

Annotation Number : CG5993
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1633968_at
Accessions : protein= , nucleotide= NP_001097015; /// NP_525095;
Pathway : "0001700 // embryonic development via the syncytial blastoderm // traceable author statement /// 0003383 // apical const
Interpro : establishment of X:A ratio // non-traceable author statement /// 0016476 // regulation of embryonic cell shape // infer
FlyMine data for full length.
BioGrid reports that CG5993 interacts with CG32346 CG1641 CG8068 CG1594 CG1594 CG1594 CG1594 CG1594 CG1594 CG1594 CG1594 CG4257 CG14226 CG14226 CG14226 CG10016 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.40None
Head2 00 of 4 0.40None
Eye0 00 of 4 0.11None
Thoracicoabdominal ganglion2 00 of 4 0.40None
Salivary gland8 30 of 4 1.61None
Crop2 10 of 4 0.50None
Midgut1 00 of 4 0.20None
Tubule2 00 of 4 0.50Down
Hindgut0 00 of 4 0.10None
Heart0 00 of 4 0.08Down
Fat body4 10 of 4 0.86None
Ovary2 10 of 4 0.50None
Testis6 11 of 4 1.20None
Male accessory glands2 00 of 4 0.40None
Virgin spermatheca1 00 of 4 0.18None
Mated spermatheca4 10 of 4 0.77None
Adult carcass5 30 of 4 0.90None
Larval CNS30 14 of 4 5.52Up
Larval Salivary gland2 10 of 4 0.50None
Larval midgut0 00 of 4 0.15None
Larval tubule1 00 of 4 0.20None
Larval hindgut2 10 of 4 0.46None
Larval fat body1 00 of 4 0.30None
Larval trachea1 00 of 4 0.21None
Larval carcass7 20 of 4 1.28None
S2 cells (growing)2 10 of 4 0.41None
Whole fly5 10 of 4

Looking for FBgn0004956. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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