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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004957 through 18771 annotations produced 1 hits



porcupine (por):

Annotation Number : CG6205
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004957
Gbrowse : chrX:18271551-18273884 (-) // 100.0 //
Probeset : 1636527_at
Accessions : protein= NP_476890;, nucleotide= NM_057542;
Pathway : 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from ele
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008415 // acyltransferase activity // non-traceabl
FlyMine data for FBgn0004957.
BDGP gene expression has embryonic in situ data for por: 4 pix of staining in 1 body parts.
Homophila reports that CG6205 is a close match (1e-40) to human gene DHOF;FODH;PORC;PORCN (NP_982301), a gene associated with Focal dermal hypoplasia, 305600 (3).
BioGrid reports that CG6205 interacts with CG9614 CG11614 CG33101 .
VDRC has 4 RNAi stocks for FBgn0004957 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain38 ± 24 of 4 1.20None
Head33 ± 54 of 4 1.00None
Eye57 ± 24 of 4 1.78Up
Thoracicoabdominal ganglion46 ± 34 of 4 1.40Up
Salivary gland58 ± 64 of 4 1.82Up
Crop54 ± 34 of 4 1.70Up
Midgut38 ± 14 of 4 1.20Up
Tubule34 ± 04 of 4 1.10Up
Hindgut36 ± 24 of 4 1.10None
Heart39 ± 54 of 4 1.23None
Fat body47 ± 74 of 4 1.47Up
Ovary78 ± 04 of 4 2.40Up
Testis11 ± 14 of 4 0.40Down
Male accessory glands45 ± 24 of 4 1.40Up
Virgin spermatheca61 ± 84 of 4 1.91Up
Mated spermatheca86 ± 64 of 4 2.67Up
Adult carcass32 ± 14 of 4 1.00None
Larval CNS75 ± 44 of 4 2.35Up
Larval Salivary gland100 ± 54 of 4 3.12Up
Larval midgut40 ± 34 of 4 1.26None
Larval tubule51 ± 44 of 4 1.60Up
Larval hindgut47 ± 34 of 4 1.46Up
Larval fat body41 ± 34 of 4 1.30None
Larval trachea76 ± 74 of 4 2.37Up
Larval carcass67 ± 44 of 4 2.11Up
S2 cells (growing)50 ± 04 of 4 1.58Up
Whole fly32 ± 14 of 4

Looking for FBgn0004957. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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