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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0005198 through 18771 annotations produced 1 hits

gigas (gig):

Annotation Number : CG6975
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005198
Gbrowse : chr3L:20122281-20132450 (+) // 100.0 //
Probeset : 1632822_at
Accessions : protein= NP_524177;, nucleotide= NM_079453;
Pathway : engulfment // inferred from mutant phenotype /// 0006974 // response to DNA damage stimulus // inferred from mutant phe
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay
FlyMine data for FBgn0005198.
BDGP gene expression has embryonic in situ data for gig: 4 pix of staining in 1 body parts.
Homophila reports that CG6975 is a close match (3e-137) to human gene LAM;TSC2 (NP_000539), a gene associated with Lymphangioleiomyomatosis, somatic, 606690 (3);Tuberous sclerosis-2, 191100 (3).
BioGrid reports that CG6975 interacts with CG4006 CG10539 CG6147 CG6147 CG6147 CG6147 CG5092 .
TRiP has 3 RNAi stocks for FBgn0005198 available for purchase.
VDRC has 3 RNAi stocks for FBgn0005198 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain216 34 of 4 2.30Up
Head129 44 of 4 1.40Up
Eye166 54 of 4 1.79Up
Thoracicoabdominal ganglion190 84 of 4 2.00Up
Salivary gland186 114 of 4 2.00Up
Crop156 54 of 4 1.70Up
Midgut114 54 of 4 1.20Up
Tubule144 44 of 4 1.60Up
Hindgut163 14 of 4 1.80Up
Heart117 44 of 4 1.27Up
Fat body147 74 of 4 1.58Up
Ovary193 34 of 4 2.10Up
Testis51 34 of 4 0.60Down
Male accessory glands134 54 of 4 1.40Up
Virgin spermatheca193 74 of 4 2.08Up
Mated spermatheca219 74 of 4 2.36Up
Adult carcass97 64 of 4 1.10None
Larval CNS199 124 of 4 2.15Up
Larval Salivary gland119 84 of 4 1.28Up
Larval midgut155 124 of 4 1.67Up
Larval tubule176 24 of 4 1.90Up
Larval hindgut165 54 of 4 1.78Up
Larval fat body117 94 of 4 1.30None
Larval trachea103 54 of 4 1.11None
Larval carcass128 84 of 4 1.38Up
S2 cells (growing)116 14 of 4 1.25Up
Whole fly93 44 of 4

Looking for FBgn0005198. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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