Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0005278 through 18771 annotations produced 1 hits



Methionine adenosyl transferase (Sam-S):

Annotation Number : CG2674
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005278
Gbrowse : chr2L:107759-114432 (+) // 100.0 //
Probeset : 1624083_s_at
Accessions : protein= NP_524923; /// NP_722593; /// NP_722594; /// NP_722595; /// NP_722596; /// NP_722597; /// NP_722598; /// NP_722599; /// NP_722600; /// NP_995602;, nucleotide= NM_080184; /// NM_164355; /// NM_164356; /// NM_164357; /// NM_164358; /// NM_164359; /// NM_164360; /// NM_164361; /// NM_164362; /// NM_205880;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred fr
FlyMine data for FBgn0005278.
BDGP gene expression has embryonic in situ data for M(2)21AB: 16 pix of staining in 16 body parts.
Homophila reports that CG2674 is a close match (1e-55) to human gene MAT1A;MATA1;SAMS1 (NP_000420), a gene associated with Hypermethioninemia, persistent, autosomal dominant, due to methionine adenosyltransferase I/III deficiency, 250850 (3);Methionine adenosyltransferase deficiency, autosomal recessive, 250850 (3).
BioGrid reports that CG2674 interacts with CG3209 CG32791 CG4880 CG8256 CG8539 CG2835 CG31374 CG5502 CG8977 CG32443 CG7803 .
TRiP has 2 RNAi stocks for FBgn0005278 available for purchase.
VDRC has 3 RNAi stocks for FBgn0005278 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1511 814 of 4 1.00None
Head1804 1014 of 4 1.20None
Eye873 294 of 4 0.57Down
Thoracicoabdominal ganglion1756 274 of 4 1.10None
Salivary gland690 394 of 4 0.45Down
Crop807 94 of 4 0.50Down
Midgut747 244 of 4 0.50Down
Tubule1498 764 of 4 1.00None
Hindgut698 274 of 4 0.50Down
Heart1312 464 of 4 0.86None
Fat body3660 1464 of 4 2.39Up
Ovary1941 294 of 4 1.30Up
Testis267 114 of 4 0.20Down
Male accessory glands2546 764 of 4 1.70Up
Virgin spermatheca3689 764 of 4 2.41Up
Mated spermatheca4130 1584 of 4 2.69Up
Adult carcass1859 684 of 4 1.20Up
Larval CNS1922 1434 of 4 1.25Up
Larval Salivary gland1703 1684 of 4 1.11None
Larval midgut951 564 of 4 0.62Down
Larval tubule536 184 of 4 0.30Down
Larval hindgut1561 654 of 4 1.02None
Larval fat body2793 1834 of 4 1.80Up
Larval trachea1565 1084 of 4 1.02None
Larval carcass1521 1784 of 4 0.99None
S2 cells (growing)2003 764 of 4 1.31Up
Whole fly1533 954 of 4

Looking for FBgn0005278. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime