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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0005322 through 18771 annotations produced 1 hits



Mitochondrial sorting protein 1 (nmd):

Annotation Number : CG5395
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005322
Gbrowse : chr2L:10302591-10303945 (-) // 100.0 //
Probeset : 1635448_at
Accessions : protein= NP_609373;, nucleotide= NM_135529;
Pathway : 0005741 // mitochondrial outer membrane // inferred from sequence or structural similarity /// 0005783 // endoplasmic re
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from ph
FlyMine data for FBgn0005322.
Homophila reports that CG5395 is a close match (4e-13) to human gene CAR;CMAR;PGN;SPG7 (NP_955399), a gene associated with Spastic paraplegia-7, 607259 (3).
BioGrid reports that CG5395 interacts with CG8719 .
VDRC has 3 RNAi stocks for FBgn0005322 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain287 ± 84 of 4 0.70Down
Head306 ± 44 of 4 0.80Down
Eye330 ± 244 of 4 0.81Down
Thoracicoabdominal ganglion359 ± 84 of 4 0.90Down
Salivary gland516 ± 44 of 4 1.27Up
Crop422 ± 74 of 4 1.00None
Midgut454 ± 114 of 4 1.10Up
Tubule434 ± 224 of 4 1.10None
Hindgut415 ± 44 of 4 1.00None
Heart505 ± 64 of 4 1.24Up
Fat body461 ± 134 of 4 1.13Up
Ovary632 ± 54 of 4 1.60Up
Testis237 ± 74 of 4 0.60Down
Male accessory glands688 ± 194 of 4 1.70Up
Virgin spermatheca454 ± 324 of 4 1.12None
Mated spermatheca543 ± 264 of 4 1.34Up
Adult carcass432 ± 84 of 4 1.10None
Larval CNS297 ± 104 of 4 0.73Down
Larval Salivary gland306 ± 84 of 4 0.75Down
Larval midgut425 ± 294 of 4 1.05None
Larval tubule321 ± 74 of 4 0.80Down
Larval hindgut414 ± 174 of 4 1.02None
Larval fat body288 ± 114 of 4 0.70Down
Larval trachea390 ± 144 of 4 0.96None
Larval carcass246 ± 124 of 4 0.61Down
S2 cells (growing)331 ± 14 of 4 0.81Down
Whole fly406 ± 124 of 4

Looking for FBgn0005322. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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