FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0005391 through 18771 annotations produced 1 hits

yolk protein 2 (Yp2):

Annotation Number : CG2979
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005391
Gbrowse : chrX:9944980-9946669 (-) // 100.0 //
Probeset : 1623655_at
Accessions : protein= NP_511102;, nucleotide= NM_078547;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // traceable
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005198 // structural molecule activity // infe
FlyMine data for FBgn0005391.
BDGP gene expression has embryonic in situ data for Yp2: 4 pix of staining in 1 body parts.
Homophila reports that CG2979 is a close match (6e-12) to human gene LIPI;LPDL;PRED5 (NP_945347), a gene associated with {Hypertriglyceridemia, susceptibility to}, 145750 (3).
BioGrid reports that CG2979 interacts with CG2979 CG6743 CG4617 CG5094 .
VDRC has 4 RNAi stocks for FBgn0005391 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1232 ± 39	4 of 4	0.30	Down
Head	5771 ± 172	4 of 4	1.30	None
Eye	6134 ± 1022	4 of 4	1.37	None
Thoracicoabdominal ganglion	1797 ± 236	4 of 4	0.40	Down
Salivary gland	306 ± 93	4 of 4	0.07	Down
Crop	1191 ± 174	4 of 4	0.30	Down
Midgut	43 ± 14	4 of 4	0.00	Down
Tubule	898 ± 529	2 of 4	0.20	Down
Hindgut	2816 ± 28	4 of 4	0.60	None
Heart	7328 ± 619	4 of 4	1.64	Up
Fat body	4427 ± 825	4 of 4	0.99	None
Ovary	2686 ± 141	4 of 4	0.60	Down
Testis	1 ± 0	0 of 4	0.00	Down
Male accessory glands	17 ± 4	0 of 4	0.00	Down
Virgin spermatheca	4427 ± 223	4 of 4	0.99	None
Mated spermatheca	4716 ± 330	4 of 4	1.05	None
Adult carcass	7551 ± 599	4 of 4	1.70	Up
Larval CNS	7 ± 5	0 of 4	0.00	Down
Larval Salivary gland	3 ± 0	0 of 4	0.00	Down
Larval midgut	33 ± 18	2 of 4	0.01	Down
Larval tubule	3 ± 2	0 of 4	0.00	Down
Larval hindgut	10 ± 3	0 of 4	0.00	Down
Larval fat body	26 ± 8	0 of 4	0.00	Down
Larval trachea	183 ± 351	1 of 4	0.04	Down
Larval carcass	3 ± 0	0 of 4	0.00	Down
S2 cells (growing)	7 ± 1	0 of 4	0.00	Down
Whole fly	4474 ± 544	4 of 4

Looking for FBgn0005391. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720