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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0005427 through 18771 annotations produced 2 hits



erect wing (ewg):

Annotation Number : CG3114
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005427
Gbrowse : chrX:162553-170410 (-) // 100.0 //
Probeset : 1629064_at
Accessions : protein= NP_001014707; /// NP_001014708; /// NP_001014709; /// NP_001014710; /// NP_001014711; /// NP_001014712; /// NP_476892; /// NP_726660;, nucleotide= NM_001014707; /// NM_001014708; /// NM_001014709; /// NM_001014710; /// NM_001014711; /// NM_001014712; /// NM_057544; /// NM_166836;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // non-traceable au
FlyMine data for FBgn0005427.
BioGrid reports that CG3114 interacts with CG3371 CG6741 CG9463 CG3162 CG3193 CG31973 CG32062 CG32068 CG32346 CG32793 CG3758 CG4035 CG40452 CG33526 CG4193 CG4550 CG4617 CG4788 CG4865 CG5140 CG5175 CG5272 CG5433 CG5814 CG6073 CG6155 CG6340 CG6359 CG6779 CG6988 CG7037 CG7583 CG7803 CG7808 CG8280 CG8986 CG8085 CG8581 .
TRiP has 2 RNAi stocks for FBgn0005427 available for purchase.
VDRC has 2 RNAi stocks for FBgn0005427 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain677 ± 74 of 422.30Up
Head115 ± 74 of 4 3.80Up
Eye142 ± 104 of 4 4.70Up
Thoracicoabdominal ganglion369 ± 44 of 412.20Up
Salivary gland43 ± 44 of 4 1.43None
Crop20 ± 23 of 4 0.70Down
Midgut28 ± 14 of 4 0.90None
Tubule31 ± 24 of 4 1.00None
Hindgut23 ± 24 of 4 0.80None
Heart11 ± 03 of 4 0.38Down
Fat body40 ± 124 of 4 1.35None
Ovary24 ± 14 of 4 0.80None
Testis4 ± 10 of 4 0.20Down
Male accessory glands24 ± 14 of 4 0.80None
Virgin spermatheca31 ± 04 of 4 1.05None
Mated spermatheca35 ± 33 of 4 1.17None
Adult carcass18 ± 23 of 4 0.60Down
Larval CNS600 ± 494 of 419.82Up
Larval Salivary gland37 ± 34 of 4 1.22None
Larval midgut24 ± 34 of 4 0.82None
Larval tubule56 ± 24 of 4 1.90Up
Larval hindgut29 ± 14 of 4 0.96None
Larval fat body20 ± 24 of 4 0.70None
Larval trachea28 ± 54 of 4 0.94None
Larval carcass18 ± 24 of 4 0.61Down
S2 cells (growing)31 ± 14 of 4 1.03None
Whole fly30 ± 24 of 4



erect wing (ewg):

Annotation Number : CG3114
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005427
Gbrowse : chrX:163641-173667 (-) // 100.0 //
Probeset : 1637705_at
Accessions : protein= NP_001014707; /// NP_001014708; /// NP_001014709; /// NP_001014710; /// NP_001014711; /// NP_001014712; /// NP_476892; /// NP_726660;, nucleotide= NM_001014707; /// NM_001014708; /// NM_001014709; /// NM_001014710; /// NM_001014711; /// NM_001014712; /// NM_057544; /// NM_166836;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // non-traceable au
FlyMine data for FBgn0005427.
BioGrid reports that CG3114 interacts with CG3371 CG6741 CG9463 CG3162 CG3193 CG31973 CG32062 CG32068 CG32346 CG32793 CG3758 CG4035 CG40452 CG33526 CG4193 CG4550 CG4617 CG4788 CG4865 CG5140 CG5175 CG5272 CG5433 CG5814 CG6073 CG6155 CG6340 CG6359 CG6779 CG6988 CG7037 CG7583 CG7803 CG7808 CG8280 CG8986 CG8085 CG8581 .
TRiP has 2 RNAi stocks for FBgn0005427 available for purchase.
VDRC has 2 RNAi stocks for FBgn0005427 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain48 ± 24 of 4 0.60Down
Head69 ± 24 of 4 0.90None
Eye38 ± 24 of 4 0.50Down
Thoracicoabdominal ganglion41 ± 14 of 4 0.50Down
Salivary gland99 ± 44 of 4 1.31Up
Crop101 ± 74 of 4 1.30Up
Midgut72 ± 24 of 4 0.90None
Tubule123 ± 84 of 4 1.60Up
Hindgut80 ± 34 of 4 1.10None
Heart57 ± 54 of 4 0.75Down
Fat body113 ± 104 of 4 1.48Up
Ovary162 ± 64 of 4 2.10Up
Testis8 ± 14 of 4 0.10Down
Male accessory glands114 ± 64 of 4 1.50Up
Virgin spermatheca238 ± 314 of 4 3.12Up
Mated spermatheca238 ± 94 of 4 3.11Up
Adult carcass69 ± 44 of 4 0.90None
Larval CNS121 ± 154 of 4 1.59Up
Larval Salivary gland87 ± 54 of 4 1.14None
Larval midgut85 ± 74 of 4 1.11None
Larval tubule130 ± 54 of 4 1.70Up
Larval hindgut76 ± 44 of 4 1.00None
Larval fat body125 ± 74 of 4 1.60Up
Larval trachea53 ± 54 of 4 0.70Down
Larval carcass54 ± 54 of 4 0.71Down
S2 cells (growing)82 ± 34 of 4 1.08None
Whole fly76 ± 44 of 4

Looking for FBgn0005427. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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