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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0005561 through 18771 annotations produced 1 hits



sparkling (sv):

Annotation Number : CG11049
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005561
Gbrowse : chr4:1109443-1133943 (+) // 100.0 //
Probeset : 1636090_a_at
Accessions : protein= NP_001014697; /// NP_001014698; /// NP_001014699; /// NP_001014700; /// NP_001014701; /// NP_001162834; /// NP_524633; /// NP_726645;, nucleotide= NM_001014697; /// NM_001014698; /// NM_001014699; /// NM_001014700; /// NM_001014701; /// NM_001169363; /// NM_079894; /// NM_166822;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription
FlyMine data for FBgn0005561.
Homophila reports that CG11049 is a close match (1e-40) to human gene KPD;MODY9;PAX4 (NP_006184), a gene associated with Diabetes mellitus, type 2, 125853 (3);Maturity-onset diabetes of the young, type IX, 612225 (3).
BioGrid reports that CG11049 interacts with CG10798 CG1689 CG1689 CG8246 CG8246 CG6775 CG4889 CG4889 CG3938 .
TRiP has 1 RNAi stocks for FBgn0005561 available for purchase.
VDRC has 1 RNAi stocks for FBgn0005561 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 23 of 4 2.10Up
Head12 14 of 4 3.10Up
Eye38 34 of 4 9.46Up
Thoracicoabdominal ganglion22 14 of 4 5.60Up
Salivary gland11 30 of 4 2.85None
Crop4 10 of 4 1.10None
Midgut7 10 of 4 1.90Up
Tubule3 00 of 4 1.00None
Hindgut4 20 of 4 1.10None
Heart3 00 of 4 0.85None
Fat body6 42 of 4 1.53None
Ovary2 00 of 4 0.60None
Testis2 00 of 4 0.70None
Male accessory glands6 10 of 4 1.60None
Virgin spermatheca2 10 of 4 0.54None
Mated spermatheca3 10 of 4 0.91None
Adult carcass12 30 of 4 3.00None
Larval CNS8 14 of 4 2.11Up
Larval Salivary gland2 10 of 4 0.64None
Larval midgut1 00 of 4 0.32Down
Larval tubule2 00 of 4 0.50None
Larval hindgut3 01 of 4 0.79None
Larval fat body8 11 of 4 2.10None
Larval trachea5 22 of 4 1.25None
Larval carcass5 10 of 4 1.26None
S2 cells (growing)4 01 of 4 1.01None
Whole fly4 02 of 4

Looking for FBgn0005561. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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