Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0005564 through 18771 annotations produced 1 hits



Shaker cognate 1 (Shal):

Annotation Number : CG9262
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005564
Gbrowse : chr3L:19564679-19577680 (-) // 100.0 //
Probeset : 1638398_at
Accessions : protein= NP_001097646; /// NP_524159;, nucleotide= NM_001104176; /// NM_079435;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0008076 // voltage-gated potassium cha
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity
FlyMine data for FBgn0005564.
BDGP gene expression has embryonic in situ data for Shal: 13 pix of staining in 5 body parts.
Homophila reports that CG9262 is a close match (2e-13) to human gene DFNA2;KCNQ4 (NP_751895), a gene associated with Deafness, autosomal dominant 2, 600101 (3).
TRiP has 1 RNAi stocks for FBgn0005564 available for purchase.
VDRC has 1 RNAi stocks for FBgn0005564 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain53 14 of 4 2.70Up
Head25 14 of 4 1.30None
Eye77 54 of 4 3.92Up
Thoracicoabdominal ganglion36 34 of 4 1.80Up
Salivary gland17 20 of 4 0.86None
Crop367 44 of 418.60Up
Midgut31 22 of 4 1.60Up
Tubule15 13 of 4 0.80Down
Hindgut106 24 of 4 5.40Up
Heart70 34 of 4 3.55Up
Fat body7 40 of 4 0.38Down
Ovary15 14 of 4 0.80None
Testis11 03 of 4 0.60Down
Male accessory glands10 10 of 4 0.50Down
Virgin spermatheca17 22 of 4 0.88None
Mated spermatheca18 14 of 4 0.91None
Adult carcass21 24 of 4 1.10None
Larval CNS13 14 of 4 0.67Down
Larval Salivary gland10 31 of 4 0.54None
Larval midgut62 34 of 4 3.13Up
Larval tubule17 23 of 4 0.90None
Larval hindgut148 64 of 4 7.49Up
Larval fat body6 10 of 4 0.30Down
Larval trachea12 31 of 4 0.61Down
Larval carcass17 23 of 4 0.91None
S2 cells (growing)1 00 of 4 0.10Down
Whole fly19 14 of 4

Looking for FBgn0005564. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime