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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0005585 through 18771 annotations produced 1 hits



calreticulin (Crc):

Annotation Number : CG9429
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005585
Gbrowse : chr3R:5454656-5456607 (-) // 100.0 //
Probeset : 1639441_at
Accessions : protein= NP_524293;, nucleotide= NM_079569;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // in
Interpro : 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding //
FlyMine data for FBgn0005585.
VDRC has 2 RNAi stocks for FBgn0005585 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain935 174 of 4 0.80Down
Head1311 884 of 4 1.10None
Eye1511 344 of 4 1.28Up
Thoracicoabdominal ganglion1022 314 of 4 0.90Down
Salivary gland4254 2004 of 4 3.60Up
Crop1365 214 of 4 1.20Up
Midgut1693 534 of 4 1.40Up
Tubule2111 1374 of 4 1.80Up
Hindgut1485 344 of 4 1.30Up
Heart1551 864 of 4 1.31Up
Fat body1303 2254 of 4 1.10None
Ovary1222 144 of 4 1.00None
Testis454 74 of 4 0.40Down
Male accessory glands8137 994 of 4 6.90Up
Virgin spermatheca1737 944 of 4 1.47Up
Mated spermatheca2045 1554 of 4 1.73Up
Adult carcass1187 244 of 4 1.00None
Larval CNS1613 454 of 4 1.37Up
Larval Salivary gland5044 2204 of 4 4.27Up
Larval midgut1725 894 of 4 1.46Up
Larval tubule2826 464 of 4 2.40Up
Larval hindgut1766 224 of 4 1.50Up
Larval fat body3595 3494 of 4 3.00Up
Larval trachea2877 4774 of 4 2.44Up
Larval carcass2067 994 of 4 1.75Up
S2 cells (growing)2970 544 of 4 2.51Up
Whole fly1181 474 of 4

Looking for FBgn0005585. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime