Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0005586 through 18771 annotations produced 1 hits



Rab-protein 3 (Rab3):

Annotation Number : CG7576
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005586
Gbrowse : chr2R:6608832-6616695 (-) // 100.0 //
Probeset : 1625838_at
Accessions : protein= NP_523687;, nucleotide= NM_078963;
Pathway : 0008021 // synaptic vesicle // non-traceable author statement /// 0008021 // synaptic vesicle // inferred from electroni
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0005586.
BDGP gene expression has embryonic in situ data for Rab3: 12 pix of staining in 10 body parts.
Homophila reports that CG7576 is a close match (3e-12) to human gene HRAS (NP_789765), a gene associated with Costello syndrome, 218040 (3);{Bladder cancer, somatic}, 109800 (3);{Thyroid carcinoma, follicular, somatic}, 188470 (3).
TRiP has 2 RNAi stocks for FBgn0005586 available for purchase.
VDRC has 1 RNAi stocks for FBgn0005586 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1540 484 of 419.80Up
Head510 284 of 4 6.60Up
Eye403 394 of 4 5.19Up
Thoracicoabdominal ganglion1287 394 of 416.50Up
Salivary gland7 31 of 4 0.09Down
Crop4 00 of 4 0.10Down
Midgut14 14 of 4 0.20Down
Tubule4 00 of 4 0.10Down
Hindgut6 13 of 4 0.10Down
Heart8 12 of 4 0.11Down
Fat body12 24 of 4 0.16Down
Ovary1 00 of 4 0.00Down
Testis1 01 of 4 0.00Down
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca9 14 of 4 0.12Down
Mated spermatheca5 11 of 4 0.07Down
Adult carcass27 44 of 4 0.30Down
Larval CNS1043 334 of 413.39Up
Larval Salivary gland5 21 of 4 0.07Down
Larval midgut12 14 of 4 0.16Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut6 04 of 4 0.08Down
Larval fat body5 10 of 4 0.10Down
Larval trachea14 54 of 4 0.18Down
Larval carcass9 24 of 4 0.12Down
S2 cells (growing)1 01 of 4 0.02Down
Whole fly77 114 of 4

Looking for FBgn0005586. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime