FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0005586 through 18771 annotations produced 1 hits

Rab-protein 3 (Rab3):

Annotation Number : CG7576
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005586
Gbrowse : chr2R:6608832-6616695 (-) // 100.0 //
Probeset : 1625838_at
Accessions : protein= NP_523687;, nucleotide= NM_078963;
Pathway : 0008021 // synaptic vesicle // non-traceable author statement /// 0008021 // synaptic vesicle // inferred from electroni
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0005586.
BDGP gene expression has embryonic in situ data for Rab3: 12 pix of staining in 10 body parts.
Homophila reports that CG7576 is a close match (3e-12) to human gene HRAS (NP_789765), a gene associated with Costello syndrome, 218040 (3);{Bladder cancer, somatic}, 109800 (3);{Thyroid carcinoma, follicular, somatic}, 188470 (3).
TRiP has 2 RNAi stocks for FBgn0005586 available for purchase.
VDRC has 1 RNAi stocks for FBgn0005586 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1540 ± 48	4 of 4	19.80	Up
Head	510 ± 28	4 of 4	6.60	Up
Eye	403 ± 39	4 of 4	5.19	Up
Thoracicoabdominal ganglion	1287 ± 39	4 of 4	16.50	Up
Salivary gland	7 ± 3	1 of 4	0.09	Down
Crop	4 ± 0	0 of 4	0.10	Down
Midgut	14 ± 1	4 of 4	0.20	Down
Tubule	4 ± 0	0 of 4	0.10	Down
Hindgut	6 ± 1	3 of 4	0.10	Down
Heart	8 ± 1	2 of 4	0.11	Down
Fat body	12 ± 2	4 of 4	0.16	Down
Ovary	1 ± 0	0 of 4	0.00	Down
Testis	1 ± 0	1 of 4	0.00	Down
Male accessory glands	3 ± 1	0 of 4	0.00	Down
Virgin spermatheca	9 ± 1	4 of 4	0.12	Down
Mated spermatheca	5 ± 1	1 of 4	0.07	Down
Adult carcass	27 ± 4	4 of 4	0.30	Down
Larval CNS	1043 ± 33	4 of 4	13.39	Up
Larval Salivary gland	5 ± 2	1 of 4	0.07	Down
Larval midgut	12 ± 1	4 of 4	0.16	Down
Larval tubule	1 ± 0	0 of 4	0.00	Down
Larval hindgut	6 ± 0	4 of 4	0.08	Down
Larval fat body	5 ± 1	0 of 4	0.10	Down
Larval trachea	14 ± 5	4 of 4	0.18	Down
Larval carcass	9 ± 2	4 of 4	0.12	Down
S2 cells (growing)	1 ± 0	1 of 4	0.02	Down
Whole fly	77 ± 11	4 of 4

Looking for FBgn0005586. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720