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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0005593 through 18771 annotations produced 1 hits



Ribosomal protein L7 (RpL7):

Annotation Number : CG4897
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005593
Gbrowse : chr2L:10201100-10202233 (+) // 100.0 //
Probeset : 1629107_at
Accessions : protein= NP_523531;, nucleotide= NM_078807;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // non-traceable author statemen
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // non-traceable author statem
FlyMine data for FBgn0005593.
BioGrid reports that CG4897 interacts with CG15483 CG2061 CG32772 CG4697 CG5149 CG6147 CG7387 CG8346 CG8440 CG8609 CG33519 .
TRiP has 1 RNAi stocks for FBgn0005593 available for purchase.
VDRC has 2 RNAi stocks for FBgn0005593 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2662 ± 604 of 4 0.70Down
Head4128 ± 1294 of 4 1.10None
Eye5237 ± 1194 of 4 1.42Up
Thoracicoabdominal ganglion3742 ± 1264 of 4 1.00None
Salivary gland8597 ± 2484 of 4 2.34Up
Crop5036 ± 2374 of 4 1.40Up
Midgut4881 ± 1074 of 4 1.30Up
Tubule5079 ± 934 of 4 1.40Up
Hindgut4419 ± 1074 of 4 1.20Up
Heart5758 ± 3854 of 4 1.57Up
Fat body5123 ± 7704 of 4 1.39Up
Ovary3235 ± 744 of 4 0.90None
Testis984 ± 94 of 4 0.30Down
Male accessory glands8350 ± 2814 of 4 2.30Up
Virgin spermatheca5131 ± 2034 of 4 1.39Up
Mated spermatheca5260 ± 1764 of 4 1.43Up
Adult carcass5381 ± 2014 of 4 1.50Up
Larval CNS2486 ± 2124 of 4 0.68Down
Larval Salivary gland7160 ± 3574 of 4 1.95Up
Larval midgut4395 ± 1844 of 4 1.19Up
Larval tubule4307 ± 734 of 4 1.20Up
Larval hindgut3952 ± 564 of 4 1.07None
Larval fat body7038 ± 6844 of 4 1.90Up
Larval trachea5285 ± 1894 of 4 1.44Up
Larval carcass4465 ± 4034 of 4 1.21None
S2 cells (growing)4252 ± 1434 of 4 1.16Up
Whole fly3679 ± 1764 of 4

Looking for FBgn0005593. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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