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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0005596 through 18771 annotations produced 2 hits



yemanuclein-alpha (yemalpha):

Annotation Number : CT34234
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005596
Gbrowse : chr3R:24944306-24944537 (-) // 100.0 //
Probeset : 1629017_s_at
Accessions : protein= NP_476893;, nucleotide= NM_057545;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 //
Interpro : 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // non-traceable author statement /// 00
FlyMine data for FBgn0005596.
BDGP gene expression has embryonic in situ data for yemalpha: 21 pix of staining in 17 body parts.
TRiP has 1 RNAi stocks for FBgn0005596 available for purchase.
VDRC has 2 RNAi stocks for FBgn0005596 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain50 ± 54 of 4 0.30Down
Head27 ± 22 of 4 0.20Down
Eye18 ± 12 of 4 0.12Down
Thoracicoabdominal ganglion44 ± 24 of 4 0.30Down
Salivary gland79 ± 54 of 4 0.52Down
Crop25 ± 10 of 4 0.20Down
Midgut29 ± 30 of 4 0.20Down
Tubule41 ± 22 of 4 0.30Down
Hindgut33 ± 30 of 4 0.20Down
Heart14 ± 10 of 4 0.09Down
Fat body29 ± 21 of 4 0.19Down
Ovary364 ± 74 of 4 2.40Up
Testis84 ± 24 of 4 0.50Down
Male accessory glands42 ± 30 of 4 0.30Down
Virgin spermatheca43 ± 30 of 4 0.28Down
Mated spermatheca42 ± 10 of 4 0.28Down
Adult carcass53 ± 30 of 4 0.30Down
Larval CNS132 ± 64 of 4 0.86None
Larval Salivary gland89 ± 60 of 4 0.58Down
Larval midgut48 ± 12 of 4 0.32Down
Larval tubule36 ± 13 of 4 0.20Down
Larval hindgut45 ± 11 of 4 0.29Down
Larval fat body40 ± 30 of 4 0.30Down
Larval trachea61 ± 83 of 4 0.40Down
Larval carcass59 ± 40 of 4 0.39Down
S2 cells (growing)122 ± 84 of 4 0.79None
Whole fly154 ± 134 of 4



yemanuclein-alpha (yemalpha):

Annotation Number : CG14513
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005596
Gbrowse : chr3R:24944051-24948597 (-) // 99.91 //
Probeset : 1634784_at
Accessions : protein= NP_476893;, nucleotide= NM_057545;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 //
Interpro : 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // non-traceable author statement /// 00
FlyMine data for FBgn0005596.
BDGP gene expression has embryonic in situ data for yemalpha: 21 pix of staining in 17 body parts.
BioGrid reports that CG14513 interacts with CG6497 CG6544 .
TRiP has 1 RNAi stocks for FBgn0005596 available for purchase.
VDRC has 2 RNAi stocks for FBgn0005596 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 ± 14 of 4 0.20Down
Head26 ± 14 of 4 0.20Down
Eye24 ± 14 of 4 0.15Down
Thoracicoabdominal ganglion34 ± 24 of 4 0.20Down
Salivary gland65 ± 54 of 4 0.39Down
Crop44 ± 34 of 4 0.30Down
Midgut36 ± 14 of 4 0.20Down
Tubule41 ± 14 of 4 0.20Down
Hindgut35 ± 24 of 4 0.20Down
Heart18 ± 14 of 4 0.11Down
Fat body38 ± 54 of 4 0.23Down
Ovary430 ± 114 of 4 2.50Up
Testis85 ± 74 of 4 0.50Down
Male accessory glands31 ± 54 of 4 0.20Down
Virgin spermatheca64 ± 54 of 4 0.38Down
Mated spermatheca68 ± 24 of 4 0.40Down
Adult carcass31 ± 24 of 4 0.20Down
Larval CNS147 ± 174 of 4 0.87None
Larval Salivary gland115 ± 54 of 4 0.68Down
Larval midgut49 ± 34 of 4 0.29Down
Larval tubule39 ± 14 of 4 0.20Down
Larval hindgut41 ± 14 of 4 0.24Down
Larval fat body53 ± 54 of 4 0.30Down
Larval trachea52 ± 64 of 4 0.31Down
Larval carcass39 ± 44 of 4 0.23Down
S2 cells (growing)105 ± 84 of 4 0.62Down
Whole fly169 ± 134 of 4

Looking for FBgn0005596. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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