FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0005613 through 18771 annotations produced 2 hits

Sox box protein 15 (Sox15):

Annotation Number : HDC06343
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005613
Gbrowse : chr2R:10099057-10102353 (-) // 100.0 //
Probeset : 1633271_at
Accessions : protein= NP_523739;, nucleotide= NM_079015;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription
FlyMine data for FBgn0005613.
VDRC has 1 RNAi stocks for FBgn0005613 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	0 of 4	1.00	None
Head	2 ± 0	0 of 4	0.60	None
Eye	5 ± 1	0 of 4	1.44	None
Thoracicoabdominal ganglion	4 ± 0	0 of 4	1.20	None
Salivary gland	12 ± 1	0 of 4	3.41	Up
Crop	3 ± 1	0 of 4	0.90	None
Midgut	4 ± 1	0 of 4	1.20	None
Tubule	3 ± 0	0 of 4	0.80	None
Hindgut	1 ± 0	0 of 4	0.50	None
Heart	3 ± 1	0 of 4	1.06	None
Fat body	4 ± 1	0 of 4	1.15	None
Ovary	2 ± 1	0 of 4	0.60	None
Testis	0 ± 0	0 of 4	0.20	None
Male accessory glands	5 ± 1	0 of 4	1.40	None
Virgin spermatheca	2 ± 1	0 of 4	0.81	None
Mated spermatheca	4 ± 0	0 of 4	1.20	None
Adult carcass	3 ± 1	0 of 4	0.90	None
Larval CNS	2 ± 1	0 of 4	0.81	None
Larval Salivary gland	9 ± 2	3 of 4	2.49	None
Larval midgut	2 ± 0	0 of 4	0.72	None
Larval tubule	3 ± 0	0 of 4	0.80	None
Larval hindgut	3 ± 0	0 of 4	1.00	None
Larval fat body	3 ± 1	0 of 4	0.90	None
Larval trachea	5 ± 0	0 of 4	1.39	None
Larval carcass	5 ± 1	0 of 4	1.43	None
S2 cells (growing)	4 ± 1	0 of 4	1.13	None
Whole fly	3 ± 1	0 of 4

Sox box protein 15 (Sox15):

Annotation Number : CG8404
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005613
Gbrowse : chr2R:10088887-10099914 (-) // 100.0 //
Probeset : 1633526_at
Accessions : protein= NP_523739;, nucleotide= NM_079015;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription
FlyMine data for FBgn0005613.
Homophila reports that CG8404 is a close match (2e-16) to human gene MRGH;SOX3 (NP_005625), a gene associated with Mental retardation, X-linked, with isolated growth hormone deficiency, 300123 (3);Panhypopituitarism, X-linked, 312000 (3).
BioGrid reports that CG8404 interacts with CG9379 .
VDRC has 1 RNAi stocks for FBgn0005613 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 1	0 of 4	0.30	None
Head	19 ± 0	4 of 4	2.50	Up
Eye	10 ± 1	0 of 4	1.34	None
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.10	Down
Salivary gland	4 ± 2	0 of 4	0.63	None
Crop	1 ± 0	0 of 4	0.20	Down
Midgut	6 ± 1	0 of 4	0.80	None
Tubule	2 ± 0	0 of 4	0.30	Down
Hindgut	4 ± 1	0 of 4	0.60	None
Heart	1 ± 0	0 of 4	0.16	Down
Fat body	9 ± 3	0 of 4	1.18	None
Ovary	2 ± 1	0 of 4	0.30	Down
Testis	3 ± 1	0 of 4	0.40	Down
Male accessory glands	1 ± 0	0 of 4	0.10	Down
Virgin spermatheca	5 ± 1	0 of 4	0.72	None
Mated spermatheca	3 ± 1	0 of 4	0.41	None
Adult carcass	23 ± 3	0 of 4	3.10	Up
Larval CNS	3 ± 1	1 of 4	0.47	Down
Larval Salivary gland	4 ± 1	0 of 4	0.62	None
Larval midgut	9 ± 0	0 of 4	1.19	None
Larval tubule	1 ± 0	0 of 4	0.20	Down
Larval hindgut	3 ± 1	0 of 4	0.43	None
Larval fat body	8 ± 1	0 of 4	1.10	None
Larval trachea	5 ± 5	1 of 4	0.77	None
Larval carcass	15 ± 1	0 of 4	1.99	Up
S2 cells (growing)	4 ± 0	0 of 4	0.52	Down
Whole fly	7 ± 1	0 of 4

Looking for FBgn0005613. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720