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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0005614 through 18771 annotations produced 1 hits


trp-like (trpl):

Annotation Number : CG18345
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005614
Gbrowse : chr2R:5641221-5653025 (+) // 100.0 //
Probeset : 1633649_s_at
Accessions : protein= NP_476895; /// NP_724822; /// NP_724823;, nucleotide= NM_057547; /// NM_165694; /// NM_165695;
Pathway : 0005622 // intracellular // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or struc
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from
FlyMine data for FBgn0005614.
BDGP gene expression has embryonic in situ data for trpl: 4 pix of staining in 1 body parts.
Homophila reports that CG18345 is a close match (8e-56) to human gene FSGS2;TRP6;TRPC6 (NP_004612), a gene associated with Glomerulosclerosis, focal segmental, 2, 603965 (3).
BioGrid reports that CG18345 interacts with CG7875 CG7875 CG7875 CG7875 CG7875 CG7875 CG7875 CG7875 CG7875 CG2457 .
TRiP has 1 RNAi stocks for FBgn0005614 available for purchase.
VDRC has 2 RNAi stocks for FBgn0005614 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain73 ± 44 of 4 0.30Down
Head2511 ± 1484 of 4 9.60Up
Eye6845 ± 1134 of 426.07Up
Thoracicoabdominal ganglion11 ± 10 of 4 0.00Down
Salivary gland21 ± 50 of 4 0.08Down
Crop11 ± 10 of 4 0.00Down
Midgut19 ± 22 of 4 0.10Down
Tubule6 ± 10 of 4 0.00Down
Hindgut12 ± 30 of 4 0.00Down
Heart13 ± 21 of 4 0.05Down
Fat body12 ± 10 of 4 0.05Down
Ovary8 ± 11 of 4 0.00Down
Testis13 ± 14 of 4 0.10Down
Male accessory glands35 ± 14 of 4 0.10Down
Virgin spermatheca9 ± 10 of 4 0.04Down
Mated spermatheca11 ± 31 of 4 0.05Down
Adult carcass16 ± 71 of 4 0.10Down
Larval CNS8 ± 21 of 4 0.03Down
Larval Salivary gland6 ± 10 of 4 0.02Down
Larval midgut7 ± 30 of 4 0.03Down
Larval tubule8 ± 20 of 4 0.00Down
Larval hindgut6 ± 21 of 4 0.02Down
Larval fat body16 ± 40 of 4 0.10Down
Larval trachea219 ± 4231 of 4 0.84None
Larval carcass16 ± 41 of 4 0.06Down
S2 cells (growing)15 ± 30 of 4 0.06Down
Whole fly262 ± 244 of 4

Looking for FBgn0005614. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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