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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0005616 through 18771 annotations produced 1 hits



male specifc lethal (msl-2):

Annotation Number : CG3241
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005616
Gbrowse : chr2L:3462217-3466111 (-) // 99.87 //
Probeset : 1635840_s_at
Accessions : protein= NP_523467; /// NP_722907;, nucleotide= NM_078743; /// NM_164536;
Pathway : by hyperactivation of X chromosome // non-traceable author statement /// 0016457 // dosage compensation complex assembl
Interpro : transcription activating // non-traceable author statement /// 0016456 // X chromosome located dosage compensation comp
FlyMine data for FBgn0005616.
BDGP gene expression has embryonic in situ data for msl-2: 4 pix of staining in 1 body parts.
BioGrid reports that CG3241 interacts with CG3496 CG10385 CG10385 CG10385 CG10385 Dmel CG18350 Dmel CG18350 Dmel CG18350 Dmel CG18350 Dmel CG18350 Dmel CG18350 Dmel CG18350 Dmel CG18350 Dmel CR32777 .
TRiP has 2 RNAi stocks for FBgn0005616 available for purchase.
VDRC has 2 RNAi stocks for FBgn0005616 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain72 14 of 4 4.60Up
Head34 34 of 4 2.20Up
Eye25 34 of 4 1.64Up
Thoracicoabdominal ganglion52 24 of 4 3.30Up
Salivary gland35 44 of 4 2.26Up
Crop28 14 of 4 1.80Up
Midgut16 24 of 4 1.00None
Tubule40 114 of 4 2.60Up
Hindgut35 14 of 4 2.30Up
Heart16 14 of 4 1.04None
Fat body30 54 of 4 1.93Up
Ovary9 24 of 4 0.60None
Testis5 12 of 4 0.30Down
Male accessory glands55 54 of 4 3.50Up
Virgin spermatheca17 14 of 4 1.08None
Mated spermatheca19 54 of 4 1.23None
Adult carcass28 44 of 4 1.80None
Larval CNS120 74 of 4 7.68Up
Larval Salivary gland42 24 of 4 2.69Up
Larval midgut21 24 of 4 1.38None
Larval tubule26 24 of 4 1.70Up
Larval hindgut44 44 of 4 2.82Up
Larval fat body16 14 of 4 1.10None
Larval trachea22 54 of 4 1.46None
Larval carcass33 14 of 4 2.15Up
S2 cells (growing)239 64 of 415.19Up
Whole fly15 04 of 4

Looking for FBgn0005616. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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