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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0005624 through 18771 annotations produced 1 hits



Posterior sex combs (Psc):

Annotation Number : CG3886
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005624
Gbrowse : chr2R:8853826-8868494 (-) // 99.8 //
Probeset : 1631095_at
Accessions : protein= NP_523725;, nucleotide= NM_079001;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0
Interpro : 0003677 // DNA binding // non-traceable author statement /// 0003677 // DNA binding // inferred from electronic annotati
FlyMine data for FBgn0005624.
BioGrid reports that CG3886 interacts with CG6502 CG6502 CG2759 CG2759 CG2759 CG2759 CG7803 CG7803 CG7803 CG7803 CG11387 CG4637 CG2125 CG5942 CG5942 CG12058 CG12058 CG3757 CG5595 CG5595 CG5595 CG5595 .
TRiP has 3 RNAi stocks for FBgn0005624 available for purchase.
VDRC has 2 RNAi stocks for FBgn0005624 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain42 24 of 4 1.80Up
Head19 12 of 4 0.80None
Eye30 24 of 4 1.26None
Thoracicoabdominal ganglion29 14 of 4 1.20None
Salivary gland31 80 of 4 1.30None
Crop20 12 of 4 0.80None
Midgut18 10 of 4 0.80None
Tubule6 00 of 4 0.30Down
Hindgut13 10 of 4 0.60None
Heart12 23 of 4 0.52Down
Fat body9 70 of 4 0.40Down
Ovary96 24 of 4 4.00Up
Testis10 10 of 4 0.40Down
Male accessory glands32 84 of 4 1.40None
Virgin spermatheca11 30 of 4 0.46Down
Mated spermatheca13 30 of 4 0.57None
Adult carcass25 10 of 4 1.00None
Larval CNS189 194 of 4 7.88Up
Larval Salivary gland57 34 of 4 2.39Up
Larval midgut16 30 of 4 0.70None
Larval tubule29 44 of 4 1.20None
Larval hindgut23 14 of 4 0.99None
Larval fat body14 30 of 4 0.60None
Larval trachea49 54 of 4 2.07Up
Larval carcass34 14 of 4 1.43None
S2 cells (growing)199 24 of 4 8.29Up
Whole fly24 34 of 4

Looking for FBgn0005624. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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