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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0005631 through 18771 annotations produced 1 hits

Roundabout 1 (robo):

Annotation Number : CG13521
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005631
Gbrowse : chr2R:18580028-18588467 (-) // 100.0 //
Probeset : 1626774_s_at
Accessions : protein= NP_476899; /// NP_726224;, nucleotide= NM_057551; /// NM_166543;
Pathway : open tracheal system // traceable author statement /// 0007432 // salivary gland boundary specification // inferred fro
Interpro : 0005886 // plasma membrane // inferred from direct assay /// 0005887 // integral to plasma membrane // inferred from seq
FlyMine data for FBgn0005631.
Homophila reports that CG13521 is a close match (8e-11) to human gene MYOT;TTID (NP_006781), a gene associated with Muscular dystrophy, limb-girdle, type 1A, 159000 (3);Myopathy, spheroid body, 182920 (3);Myotilinopathy, 609200 (3).
BioGrid reports that CG13521 interacts with CG4032 CG4032 CG15112 CG15112 CG5481 CG5481 CG5481 CG5481 CG5481 CG5481 CG5481 CG5481 CG5481 CG5481 CG5481 CG5481 CG8355 CG8355 CG8355 CG8355 CG8355 CG8355 CG8355 CG8355 CG8355 CG8355 CG8355 CG8355 CG8355 CG8355 CG12052 CG4032 CG4032 CG12530 CG7555 CG2248 CG8416 CG17943 CG17943 CG8355 .
TRiP has 4 RNAi stocks for FBgn0005631 available for purchase.
VDRC has 7 RNAi stocks for FBgn0005631 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain303 44 of 412.70Up
Head79 44 of 4 3.30Up
Eye87 64 of 4 3.64Up
Thoracicoabdominal ganglion216 64 of 4 9.00Up
Salivary gland29 80 of 4 1.22None
Crop67 44 of 4 2.80Up
Midgut40 24 of 4 1.70Up
Tubule35 24 of 4 1.50Up
Hindgut47 14 of 4 2.00Up
Heart52 64 of 4 2.18Up
Fat body19 23 of 4 0.82None
Ovary5 12 of 4 0.20Down
Testis21 04 of 4 0.90None
Male accessory glands36 34 of 4 1.50Up
Virgin spermatheca16 14 of 4 0.71Down
Mated spermatheca22 44 of 4 0.92None
Adult carcass26 34 of 4 1.10None
Larval CNS418 404 of 417.49Up
Larval Salivary gland31 44 of 4 1.33None
Larval midgut46 74 of 4 1.93None
Larval tubule64 44 of 4 2.70Up
Larval hindgut74 34 of 4 3.09Up
Larval fat body9 22 of 4 0.40Down
Larval trachea140 54 of 4 5.87Up
Larval carcass55 74 of 4 2.30Up
S2 cells (growing)204 74 of 4 8.55Up
Whole fly23 24 of 4

Looking for FBgn0005631. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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