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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0005638 through 18771 annotations produced 1 hits



chr2R:20219044-20221829 (-) // 100.0 // (CCAAT/enhancer binding protein):

Annotation Number : CG4354
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1641677_at
Accessions : protein= , nucleotide= NP_523843;
Pathway : "0001708 // cell fate specification // traceable author statement /// 0006350 // transcription // inferred from electron
Interpro : DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription
FlyMine data for full length.
BioGrid reports that CG4354 interacts with CG4032 CG4466 CG9375 CG32134 CG32134 CG4260 CG4257 CG5486 CG5695 CG10379 CG5408 CG9397 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 01 of 4 0.20Down
Head12 14 of 4 0.40None
Eye7 13 of 4 0.26Down
Thoracicoabdominal ganglion7 12 of 4 0.30Down
Salivary gland21 43 of 4 0.75None
Crop11 22 of 4 0.40None
Midgut18 24 of 4 0.60None
Tubule10 02 of 4 0.40Down
Hindgut9 33 of 4 0.30Down
Heart4 00 of 4 0.16Down
Fat body18 24 of 4 0.66None
Ovary9 13 of 4 0.30Down
Testis4 11 of 4 0.20Down
Male accessory glands11 22 of 4 0.40None
Virgin spermatheca12 14 of 4 0.43None
Mated spermatheca14 14 of 4 0.52None
Adult carcass41 44 of 4 1.50None
Larval CNS8 14 of 4 0.30Down
Larval Salivary gland8 22 of 4 0.30Down
Larval midgut106 664 of 4 3.75None
Larval tubule884 604 of 431.10Up
Larval hindgut62 134 of 4 2.20None
Larval fat body11 12 of 4 0.40None
Larval trachea3 12 of 4 0.12Down
Larval carcass8 02 of 4 0.31Down
S2 cells (growing)5 01 of 4 0.18Down
Whole fly28 54 of 4

Looking for FBgn0005638. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime