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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0005640 through 18771 annotations produced 2 hits



/// Pftaire (CG10038 /// Eip63E):

Annotation Number : CG10038
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038013
Gbrowse : chr3R:8174705-8176367 (-) // 100.0 //
Probeset : 1625002_a_at
Accessions : protein= NP_001036581; /// NP_001036582; /// NP_001036583; /// NP_001036584; /// NP_001036585; /// NP_001036586; /// NP_001163340; /// NP_523904; /// NP_650176; /// NP_728888; /// NP_728889; /// NP_728890; /// NP_728891; /// NP_731685;, nucleotide= NM_001043116; /// NM_001043117; /// NM_001043118; /// NM_001043119; /// NM_001043120; /// NM_001043121; /// NM_001169869; /// NM_079180; /// NM_141919; /// NM_168033; /// NM_168034; /// NM_168035; /// NM_168036; /// NM_169460;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0038013.
VDRC has 1 RNAi stocks for FBgn0038013 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain129 44 of 4 0.60Down
Head141 124 of 4 0.70Down
Eye152 74 of 4 0.74Down
Thoracicoabdominal ganglion135 44 of 4 0.70Down
Salivary gland250 134 of 4 1.21Up
Crop215 74 of 4 1.00None
Midgut146 24 of 4 0.70Down
Tubule147 24 of 4 0.70Down
Hindgut149 24 of 4 0.70Down
Heart197 84 of 4 0.96None
Fat body194 274 of 4 0.95None
Ovary326 54 of 4 1.60Up
Testis174 44 of 4 0.80Down
Male accessory glands270 104 of 4 1.30Up
Virgin spermatheca468 154 of 4 2.28Up
Mated spermatheca475 344 of 4 2.31Up
Adult carcass143 124 of 4 0.70Down
Larval CNS378 184 of 4 1.84Up
Larval Salivary gland219 64 of 4 1.07None
Larval midgut96 54 of 4 0.47Down
Larval tubule234 44 of 4 1.10Up
Larval hindgut146 94 of 4 0.71Down
Larval fat body252 164 of 4 1.20None
Larval trachea287 114 of 4 1.39Up
Larval carcass177 104 of 4 0.86None
S2 cells (growing)226 114 of 4 1.10None
Whole fly205 64 of 4



Pftaire (Eip63E):

Annotation Number : CG10579
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005640
Gbrowse : chr3L:3515684-3608551 (+) // 100.0 //
Probeset : 1626138_s_at
Accessions : protein= NP_001036581; /// NP_001036582; /// NP_001036583; /// NP_001036584; /// NP_001036585; /// NP_001036586; /// NP_001163340; /// NP_523904; /// NP_728888; /// NP_728889; /// NP_728890; /// NP_728891;, nucleotide= NM_001043116; /// NM_001043117; /// NM_001043118; /// NM_001043119; /// NM_001043120; /// NM_001043121; /// NM_001169869; /// NM_079180; /// NM_168033; /// NM_168034; /// NM_168035; /// NM_168036;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0005640.
BDGP gene expression has embryonic in situ data for Eip63E: 14 pix of staining in 9 body parts.
Homophila reports that CG10579 is a close match (9e-11) to human gene PHA2B;PRKWNK4;WNK4 (NP_115763), a gene associated with Pseudohypoaldosteronism type II, 145260 (3).
BioGrid reports that CG10579 interacts with CG8997 CG7281 CG14939 CG31884 CG31196 .
TRiP has 3 RNAi stocks for FBgn0005640 available for purchase.
VDRC has 3 RNAi stocks for FBgn0005640 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain295 134 of 4 1.20None
Head204 174 of 4 0.80None
Eye356 334 of 4 1.39Up
Thoracicoabdominal ganglion284 134 of 4 1.10None
Salivary gland1463 664 of 4 5.73Up
Crop305 194 of 4 1.20None
Midgut379 184 of 4 1.50Up
Tubule560 554 of 4 2.20Up
Hindgut309 124 of 4 1.20Up
Heart221 164 of 4 0.87None
Fat body273 484 of 4 1.07None
Ovary411 94 of 4 1.60Up
Testis164 44 of 4 0.60Down
Male accessory glands132 44 of 4 0.50Down
Virgin spermatheca346 214 of 4 1.35Up
Mated spermatheca403 144 of 4 1.58Up
Adult carcass139 114 of 4 0.50Down
Larval CNS250 294 of 4 0.98None
Larval Salivary gland203 144 of 4 0.80Down
Larval midgut194 224 of 4 0.76None
Larval tubule413 144 of 4 1.60Up
Larval hindgut668 524 of 4 2.62Up
Larval fat body454 484 of 4 1.80Up
Larval trachea1124 744 of 4 4.40Up
Larval carcass389 464 of 4 1.52None
S2 cells (growing)312 34 of 4 1.22Up
Whole fly255 154 of 4

Looking for FBgn0005640. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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