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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0005642 through 18771 annotations produced 1 hits



chr3R:24633698-24637060 (-) // 100.0 // (pourquoi-pas?):

Annotation Number : CG1454
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1635761_at
Accessions : protein= , nucleotide= NP_476900;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // non-traceable author statement /// 0007275 // multicellular organismal development // inferred from el
FlyMine data for full length.
Homophila reports that CG1454 is a close match (4e-11) to human gene GLIS2;NPHP7 (NP_115964), a gene associated with Nephronophthisis 7, 611498 (3).
BioGrid reports that CG1454 interacts with CG9398 CG17319 CG5792 CG5930 CG6576 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain114 ± 64 of 4 0.80None
Head52 ± 24 of 4 0.40Down
Eye66 ± 64 of 4 0.46Down
Thoracicoabdominal ganglion68 ± 14 of 4 0.50Down
Salivary gland124 ± 34 of 4 0.86None
Crop74 ± 64 of 4 0.50Down
Midgut67 ± 24 of 4 0.50Down
Tubule72 ± 34 of 4 0.50Down
Hindgut68 ± 14 of 4 0.50Down
Heart51 ± 54 of 4 0.36Down
Fat body49 ± 94 of 4 0.34Down
Ovary444 ± 84 of 4 3.10Up
Testis75 ± 34 of 4 0.50Down
Male accessory glands80 ± 104 of 4 0.60Down
Virgin spermatheca72 ± 14 of 4 0.50Down
Mated spermatheca73 ± 54 of 4 0.51Down
Adult carcass66 ± 74 of 4 0.50Down
Larval CNS182 ± 84 of 4 1.26Up
Larval Salivary gland132 ± 34 of 4 0.92None
Larval midgut51 ± 14 of 4 0.35Down
Larval tubule55 ± 94 of 4 0.40Down
Larval hindgut56 ± 24 of 4 0.39Down
Larval fat body52 ± 34 of 4 0.40Down
Larval trachea105 ± 84 of 4 0.73Down
Larval carcass58 ± 44 of 4 0.40Down
S2 cells (growing)170 ± 34 of 4 1.18None
Whole fly144 ± 104 of 4

Looking for FBgn0005642. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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