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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0005654 through 18771 annotations produced 1 hits



/// Origin recognition complex subunit 3 (CG34315 /// lat):

Annotation Number : CG4088
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005654 /// FBgn0085344
Gbrowse : chr2R:9090230-9094027 (-) // 100.0 //
Probeset : 1627828_s_at
Accessions : protein= NP_001097298; /// NP_476904;, nucleotide= NM_001103828; /// NM_057556;
Pathway : 0005664 // nuclear origin of replication recognition complex // inferred from direct assay /// 0005664 // nuclear origin
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // non-traceable author stateme
FlyMine data for FBgn0005654 /// FBgn0085344.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 14 of 4 0.10Down
Head9 00 of 4 0.10Down
Eye8 02 of 4 0.10Down
Thoracicoabdominal ganglion9 22 of 4 0.10Down
Salivary gland9 30 of 4 0.11Down
Crop11 21 of 4 0.10Down
Midgut15 01 of 4 0.20Down
Tubule6 10 of 4 0.10Down
Hindgut5 00 of 4 0.10Down
Heart3 11 of 4 0.04Down
Fat body3 30 of 4 0.04Down
Ovary198 74 of 4 2.30Up
Testis434 54 of 4 4.90Up
Male accessory glands12 30 of 4 0.10Down
Virgin spermatheca4 10 of 4 0.05Down
Mated spermatheca4 10 of 4 0.05Down
Adult carcass8 00 of 4 0.10Down
Larval CNS74 64 of 4 0.84None
Larval Salivary gland14 23 of 4 0.16Down
Larval midgut6 10 of 4 0.08Down
Larval tubule11 12 of 4 0.10Down
Larval hindgut11 20 of 4 0.13Down
Larval fat body64 383 of 4 0.70None
Larval trachea19 24 of 4 0.22Down
Larval carcass19 14 of 4 0.22Down
S2 cells (growing)48 34 of 4 0.55Down
Whole fly87 44 of 4

Looking for FBgn0005654. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime