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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0005658 through 18771 annotations produced 1 hits



Ets at 65A (Ets65A):

Annotation Number : CG7018
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005658
Gbrowse : chr3L:6091221-6117030 (+) // 100.0 //
Probeset : 1640371_a_at
Accessions : protein= NP_001137894; /// NP_523945; /// NP_729142;, nucleotide= NM_001144422; /// NM_079221; /// NM_168156;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription
FlyMine data for FBgn0005658.
BDGP gene expression has embryonic in situ data for Ets65A: 16 pix of staining in 9 body parts.
Homophila reports that CG7018 is a close match (5e-13) to human gene ETV6;TEL (NP_001978), a gene associated with Leukemia, acute myeloid, somatic, 601626 (3).
TRiP has 1 RNAi stocks for FBgn0005658 available for purchase.
VDRC has 2 RNAi stocks for FBgn0005658 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain103 ± 74 of 425.40Up
Head20 ± 24 of 4 5.00Up
Eye7 ± 13 of 4 1.77None
Thoracicoabdominal ganglion39 ± 14 of 4 9.70Up
Salivary gland7 ± 21 of 4 1.85None
Crop3 ± 11 of 4 0.90None
Midgut0 ± 00 of 4 0.10Down
Tubule3 ± 00 of 4 0.80Down
Hindgut3 ± 01 of 4 0.80None
Heart2 ± 11 of 4 0.60None
Fat body9 ± 14 of 4 2.43Up
Ovary1 ± 00 of 4 0.30Down
Testis0 ± 00 of 4 0.20Down
Male accessory glands2 ± 10 of 4 0.70None
Virgin spermatheca6 ± 02 of 4 1.53None
Mated spermatheca6 ± 12 of 4 1.49None
Adult carcass4 ± 10 of 4 1.20None
Larval CNS150 ± 444 of 437.04Up
Larval Salivary gland2 ± 00 of 4 0.55None
Larval midgut1 ± 00 of 4 0.37None
Larval tubule2 ± 10 of 4 0.50None
Larval hindgut3 ± 03 of 4 0.75None
Larval fat body3 ± 10 of 4 0.90None
Larval trachea2 ± 01 of 4 0.52None
Larval carcass14 ± 24 of 4 3.49Up
S2 cells (growing)1 ± 00 of 4 0.34Down
Whole fly4 ± 02 of 4

Looking for FBgn0005658. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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