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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0005659 through 18771 annotations produced 1 hits



Ets at 98B (Ets98B):

Annotation Number : CG5583
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005659
Gbrowse : chr3R:23562261-23572797 (+) // 100.0 //
Probeset : 1625695_at
Accessions : protein= NP_524535;, nucleotide= NM_079811;
Pathway : DNA-dependent // inferred from electronic annotation /// 0008354 // germ cell migration // inferred from mutant phenoty
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0005659.
TRiP has 2 RNAi stocks for FBgn0005659 available for purchase.
VDRC has 2 RNAi stocks for FBgn0005659 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 00 of 4 0.60Down
Head24 ± 14 of 4 2.00Up
Eye26 ± 14 of 4 2.11Up
Thoracicoabdominal ganglion4 ± 10 of 4 0.30Down
Salivary gland9 ± 20 of 4 0.72None
Crop34 ± 24 of 4 2.70Up
Midgut11 ± 40 of 4 0.90None
Tubule5 ± 00 of 4 0.40Down
Hindgut44 ± 54 of 4 3.50Up
Heart15 ± 13 of 4 1.26None
Fat body38 ± 63 of 4 3.06Up
Ovary4 ± 00 of 4 0.30Down
Testis3 ± 10 of 4 0.30Down
Male accessory glands5 ± 10 of 4 0.40Down
Virgin spermatheca8 ± 20 of 4 0.64None
Mated spermatheca18 ± 20 of 4 1.45None
Adult carcass42 ± 23 of 4 3.40Up
Larval CNS3 ± 20 of 4 0.29Down
Larval Salivary gland8 ± 10 of 4 0.66None
Larval midgut17 ± 20 of 4 1.35None
Larval tubule3 ± 10 of 4 0.20Down
Larval hindgut24 ± 14 of 4 1.93Up
Larval fat body42 ± 44 of 4 3.30Up
Larval trachea26 ± 24 of 4 2.07Up
Larval carcass17 ± 00 of 4 1.38Up
S2 cells (growing)6 ± 10 of 4 0.49Down
Whole fly12 ± 10 of 4

Looking for FBgn0005659. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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