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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0005664 through 18771 annotations produced 1 hits



drosocrystallin (Cry):

Annotation Number : CG16963
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005664
Gbrowse : chr2L:11944140-11946805 (+) // 100.0 //
Probeset : 1623757_at
Accessions : protein= NP_476906;, nucleotide= NM_057558;
Interpro : 0005212 // structural constituent of eye lens // inferred from direct assay /// 0005214 // structural constituent of chi
FlyMine data for FBgn0005664.
BDGP gene expression has embryonic in situ data for Cry: 8 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0005664 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.20Down
Head50 ± 74 of 4 1.20None
Eye286 ± 194 of 4 7.02Up
Thoracicoabdominal ganglion5 ± 20 of 4 0.10Down
Salivary gland21 ± 10 of 4 0.52Down
Crop5 ± 10 of 4 0.10Down
Midgut463 ± 194 of 411.30Up
Tubule7 ± 00 of 4 0.20Down
Hindgut11 ± 00 of 4 0.30Down
Heart4 ± 10 of 4 0.11Down
Fat body9 ± 51 of 4 0.22Down
Ovary2 ± 10 of 4 0.10Down
Testis2 ± 00 of 4 0.10Down
Male accessory glands6 ± 50 of 4 0.10Down
Virgin spermatheca9 ± 10 of 4 0.23Down
Mated spermatheca13 ± 20 of 4 0.32Down
Adult carcass7 ± 30 of 4 0.20Down
Larval CNS6 ± 20 of 4 0.15Down
Larval Salivary gland5 ± 10 of 4 0.12Down
Larval midgut8 ± 20 of 4 0.20Down
Larval tubule5 ± 10 of 4 0.10Down
Larval hindgut6 ± 00 of 4 0.16Down
Larval fat body5 ± 10 of 4 0.10Down
Larval trachea8 ± 51 of 4 0.21Down
Larval carcass6 ± 10 of 4 0.15Down
S2 cells (growing)3 ± 10 of 4 0.08Down
Whole fly40 ± 44 of 4

Looking for FBgn0005664. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime