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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0005666 through 18771 annotations produced 1 hits



Projectin (bt):

Annotation Number : CG32019
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005666
Gbrowse : chr4:745029-796720 (+) // 100.0 //
Probeset : 1626397_at
Accessions : protein= NP_001162825; /// NP_001162826; /// NP_995598;, nucleotide= NM_001169354; /// NM_001169355; /// NM_205876;
Pathway : 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0030018 // Z disc // inferred from direct as
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0005666.
BDGP gene expression has embryonic in situ data for bt: 11 pix of staining in 3 body parts.
Homophila reports that CG32019 is a close match (8e-11) to human gene RP39;USH2A (NP_009054), a gene associated with Retinitis pigmentosa-39, 268000 (3);Usher syndrome, type 2A, 276901 (3).
BioGrid reports that CG32019 interacts with CG4810 CG6163 .
TRiP has 2 RNAi stocks for FBgn0005666 available for purchase.
VDRC has 2 RNAi stocks for FBgn0005666 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 24 of 4 0.00Down
Head845 174 of 4 0.70None
Eye113 184 of 4 0.10Down
Thoracicoabdominal ganglion77 104 of 4 0.10Down
Salivary gland17 31 of 4 0.01Down
Crop4100 1454 of 4 3.60Up
Midgut504 164 of 4 0.40Down
Tubule66 64 of 4 0.10Down
Hindgut1923 154 of 4 1.70Up
Heart1441 1224 of 4 1.26None
Fat body95 314 of 4 0.08Down
Ovary65 14 of 4 0.10Down
Testis239 144 of 4 0.20Down
Male accessory glands974 674 of 4 0.90None
Virgin spermatheca119 124 of 4 0.10Down
Mated spermatheca217 334 of 4 0.19Down
Adult carcass2888 1394 of 4 2.50Up
Larval CNS38 34 of 4 0.03Down
Larval Salivary gland19 34 of 4 0.02Down
Larval midgut418 174 of 4 0.37Down
Larval tubule43 44 of 4 0.00Down
Larval hindgut2229 1154 of 4 1.95Up
Larval fat body213 284 of 4 0.20Down
Larval trachea388 2174 of 4 0.34Down
Larval carcass4875 3674 of 4 4.26Up
S2 cells (growing)5 01 of 4 0.00Down
Whole fly1145 1574 of 4

Looking for FBgn0005666. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime