Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0005677 through 18771 annotations produced 1 hits



Dachshund (dac):

Annotation Number : CG4952
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005677
Gbrowse : chr2L:16466509-16485984 (-) // 100.0 //
Probeset : 1633341_s_at
Accessions : protein= NP_001014486; /// NP_001014487; /// NP_723968; /// NP_723969; /// NP_723970; /// NP_723971; /// NP_723972;, nucleotide= NM_001014486; /// NM_001014487; /// NM_165159; /// NM_165160; /// NM_165161; /// NM_165162; /// NM_165163;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription fact
FlyMine data for FBgn0005677.
BDGP gene expression has embryonic in situ data for dac: 24 pix of staining in 9 body parts.
BioGrid reports that CG4952 interacts with CG9554 CG9554 CG10798 CG9885 CG10079 CG4637 CG1464 CG1464 CG3938 .
TRiP has 2 RNAi stocks for FBgn0005677 available for purchase.
VDRC has 2 RNAi stocks for FBgn0005677 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain281 54 of 424.80Up
Head59 54 of 4 5.20Up
Eye88 64 of 4 7.81Up
Thoracicoabdominal ganglion92 34 of 4 8.20Up
Salivary gland8 20 of 4 0.76None
Crop8 21 of 4 0.70None
Midgut8 01 of 4 0.70None
Tubule22 92 of 4 2.00None
Hindgut44 14 of 4 3.90Up
Heart3 10 of 4 0.33Down
Fat body13 30 of 4 1.16None
Ovary0 00 of 4 0.00Down
Testis7 12 of 4 0.60None
Male accessory glands4 10 of 4 0.40Down
Virgin spermatheca23 24 of 4 2.10Up
Mated spermatheca34 24 of 4 3.04Up
Adult carcass20 30 of 4 1.80None
Larval CNS362 624 of 431.84Up
Larval Salivary gland5 10 of 4 0.51Down
Larval midgut5 10 of 4 0.49Down
Larval tubule232 284 of 420.50Up
Larval hindgut41 24 of 4 3.64Up
Larval fat body3 10 of 4 0.30Down
Larval trachea8 42 of 4 0.75None
Larval carcass22 33 of 4 1.94Up
S2 cells (growing)0 00 of 4 0.07Down
Whole fly11 13 of 4

Looking for FBgn0005677. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime