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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0005694 through 18771 annotations produced 1 hits



Adh enhancer factor 1 (Aef1):

Annotation Number : CG5683
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005694
Gbrowse : chr3L:21426540-21431271 (+) // 100.0 //
Probeset : 1624248_s_at
Accessions : protein= NP_524200; /// NP_730630; /// NP_730631;, nucleotide= NM_079476; /// NM_168903; /// NM_168904;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from elect
FlyMine data for FBgn0005694.
BDGP gene expression has embryonic in situ data for Aef1: 8 pix of staining in 1 body parts.
Homophila reports that CG5683 is a close match (3e-11) to human gene BCD1;COPEB;KLF6;ZF9 (NP_001291), a gene associated with Gastric cancer, somatic, 137215 (3);Prostate cancer, somatic, 176807 (3).
BioGrid reports that CG5683 interacts with CG9986 .
TRiP has 1 RNAi stocks for FBgn0005694 available for purchase.
VDRC has 3 RNAi stocks for FBgn0005694 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain207 44 of 4 6.10Up
Head79 64 of 4 2.30Up
Eye77 34 of 4 2.28Up
Thoracicoabdominal ganglion144 24 of 4 4.30Up
Salivary gland114 114 of 4 3.36Up
Crop67 34 of 4 2.00Up
Midgut53 34 of 4 1.60None
Tubule36 24 of 4 1.10None
Hindgut55 34 of 4 1.60Up
Heart43 24 of 4 1.28None
Fat body95 64 of 4 2.82Up
Ovary32 34 of 4 1.00None
Testis15 24 of 4 0.40None
Male accessory glands66 34 of 4 2.00Up
Virgin spermatheca43 14 of 4 1.27None
Mated spermatheca40 24 of 4 1.18None
Adult carcass53 34 of 4 1.60Up
Larval CNS119 74 of 4 3.53Up
Larval Salivary gland87 24 of 4 2.59Up
Larval midgut41 34 of 4 1.22None
Larval tubule43 14 of 4 1.30None
Larval hindgut48 44 of 4 1.44None
Larval fat body36 34 of 4 1.10None
Larval trachea53 54 of 4 1.57None
Larval carcass68 44 of 4 2.02Up
S2 cells (growing)85 24 of 4 2.53Up
Whole fly33 64 of 4

Looking for FBgn0005694. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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